Special

RnoALTD0004676-1/2 @ rn6

Alternative 5'ss

Gene
Description
bromodomain containing 4 [Source:RGD Symbol;Acc:1307282]
Coordinates
chr7:14255901-14302552:-
Coord C1 exon
chr7:14302492-14302552
Coord A exon
NA
Coord C2 exon
chr7:14255901-14256219
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
3' ss Seq
ACTTTTTTCTTTCTGTGTAGAGT
3' ss Score
9.81
Exon sequences
Seq C1 exon
GTGAGGAGGAGGAGGAGGAGGAAGCTGCTGCCGCGGGATCTGCGGTGCGCGCCCGGCCCGT
Seq A exon
NA
Seq C2 exon
AGTGCCTGGTGAAGAATGTGATGGGATCACTAGCATGTCTACGGAGAGCGGCCCTGGGACAAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACCTCCCAAATGTCTACAACGCAGGCCCAGGCCCAACCCCAGTCAGCAAATGCAGCCAGCACCAATCCTCCACCCCCAGAGACCTCCAACCCTAACAAGCCCAAGAGGCAGACCAACCAACTGCAATATCTGCTCAGAGTGGTGCTCAAGACACTATGGAAACACCAGTTTGCGTGGCCTTTCCAGCAGCCTGTGGATGCCGTCAAGCTGAACCTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006770-1-5,2-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact

5' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=0.632
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
PF0043920=Bromodomain=PU(32.6=29.5)


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGAGGAGGAGGAGGAAG
R:
CTTGAGCACCACTCTGAGCAG
Band lengths:
308-512
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]