RnoEX0015127 @ rn6
Exon Skipping
Gene
ENSRNOG00000006770 | Brd4
Description
bromodomain containing 4 [Source:RGD Symbol;Acc:1307282]
Coordinates
chr7:14286421-14296699:-
Coord C1 exon
chr7:14296599-14296699
Coord A exon
chr7:14293780-14293923
Coord C2 exon
chr7:14286421-14286521
Length
144 bp
Sequences
Splice sites
3' ss Seq
TGAGTACACTGTGTCTTCAGATT
3' ss Score
6.25
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
GCTGTGTTCCCAGCCCTGCAGAGACCAACTGCATTGCCTTTCTAGTGCTTGTATCATAGTGTTGAAATGAAATAACATTTGAGATTCGGAAGTCCAAGAAT
Seq A exon
ATTCCAGAAGAGGGCATCAGATCCCATTACAGATGGTTTTAAGCCACCATGTGATTGCCGGGAATGAAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTATCTGCTGGGCCATCTCTGCAGCCTTCCACTACCCTCTTAAG
Seq C2 exon
TTTTCAGAACAGAGACTCTCACCCAGCTCACCCTGAACCCCATTTTGTGAGTGGAGCTTTGAGCAGGACTACCCATTTTGGCACATAGTCTTGTGAATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006770-'3-2,'3-1,4-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGTTCCCAGCCCTG
R:
TCCATTCACAAGACTATGTGCCA
Band lengths:
202-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]