RnoALTD0004676-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000006770 | Brd4
Description
bromodomain containing 4 [Source:RGD Symbol;Acc:1307282]
Coordinates
chr7:14255901-14302552:-
Coord C1 exon
chr7:14302492-14302552
Coord A exon
chr7:14302288-14302491
Coord C2 exon
chr7:14255901-14256219
Length
204 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAA
5' ss Score
4.54
3' ss Seq
ACTTTTTTCTTTCTGTGTAGAGT
3' ss Score
9.81
Exon sequences
Seq C1 exon
GTGAGGAGGAGGAGGAGGAGGAAGCTGCTGCCGCGGGATCTGCGGTGCGCGCCCGGCCCGT
Seq A exon
GTAAGTCCGGGCCCGGGATGCTGGCCGCGGGTACTGCTGGTCTCTCTGCTTGCGGTTCCCCCTTGGGGCGGGCCGTTCCTGCGCGTTTTGCCCTGGCGCGCTCTCCTTCCGTCAGCTGGGTCCTCCTGCCAGTGCTGGGATAGCGAGTTCCCGCTTCCATAGTCTCACCTTTCCGGCTGTCCCTGGAGCTCTGCCTAGAAAGAG
Seq C2 exon
AGTGCCTGGTGAAGAATGTGATGGGATCACTAGCATGTCTACGGAGAGCGGCCCTGGGACAAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACCTCCCAAATGTCTACAACGCAGGCCCAGGCCCAACCCCAGTCAGCAAATGCAGCCAGCACCAATCCTCCACCCCCAGAGACCTCCAACCCTAACAAGCCCAAGAGGCAGACCAACCAACTGCAATATCTGCTCAGAGTGGTGCTCAAGACACTATGGAAACACCAGTTTGCGTGGCCTTTCCAGCAGCCTGTGGATGCCGTCAAGCTGAACCTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006770-1-5,2-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.632
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043920=Bromodomain=PU(32.6=29.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGAGGAGGAGGAGGAAG
R:
CTTGAGCACCACTCTGAGCAG
Band lengths:
308-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]