RnoALTD0011985-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000021011 | Fut2
Description
fucosyltransferase 2 [Source:RGD Symbol;Acc:2639]
Coordinates
chr1:101631635-101651672:-
Coord C1 exon
chr1:101651572-101651672
Coord A exon
chr1:101651562-101651571
Coord C2 exon
chr1:101631635-101634407
Length
10 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTGCTTTCTTTCCTGGTAGCCA
3' ss Score
8.73
Exon sequences
Seq C1 exon
TGAATGAAGAGCCAAGCTGGAAGGTACCCTGAGCCACCAGTCTGCAGAGCCACCCTGCCGTCCATTCGAAGGTCATTTCCCTGTTACCACAGCCAGAAGAG
Seq A exon
GTGCGTACAG
Seq C2 exon
CCATGGCCAGCGCCCAGGTTCCTTTCTCCTTTCCTCTGGCCCACTTCCTCATCTTTGTCTTCGTGACTTCCACCATCATCCACCTCCAGCAGCGAATAGTGAAGCTCCAACCCCTGTCAGAGAAGGAATTACCGATGACGACTCAAATGTCCTCGGGAAACACAGAAAGCCCAGAGATGCGACGGGACAGCGAGCAGCATGGGAATGGAGAGCTGCGGGGCATGTTCACGATCAATTCCATTGGCCGGCTGGGGAACCAGATGGGCGAATACGCCACACTCTTTGCACTGGCCAGGATGAACGGACGGCTTGCGTTCATCCCCGCATCCATGCACAACGCTCTAGCGCCCATCTTCAGGATCAGCCTCCCGGTGTTACACAGCGACACGGCCAAAAAGATCCCATGGCAGAATTACCATCTCAACGACTGGATGGAGGAGCGTTACCGCCACATTCCGGGACACTTTGTGCGCTTCACGGGATACCCGTGCTCCTGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021011-0-3,1-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0153111=Glyco_transf_11=WD(100=91.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTCCATTCGAAGGTCATT
R:
AAGATGAGGAAGTGGGCCAGA
Band lengths:
100-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]