RnoINT0063048 @ rn6
Intron Retention
Gene
ENSRNOG00000021011 | Fut2
Description
fucosyltransferase 2 [Source:RGD Symbol;Acc:2639]
Coordinates
chr1:101631635-101639684:-
Coord C1 exon
chr1:101639581-101639684
Coord A exon
chr1:101634408-101639580
Coord C2 exon
chr1:101631635-101634407
Length
5173 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGTGCTTTCTTTCCTGGTAGCCA
3' ss Score
8.73
Exon sequences
Seq C1 exon
GACTGCTGGAGACCCTGGAGAGAGGCCACCTTGATCTCCCCCGAGACTGGAGAGTCTCGCCGGAATCCTTACCTGCGAACTCTCAGCTAAGTTAAATCCAGCAG
Seq A exon
GTGAGCAGCCTTGGGGTGACAGGCTTAGGACTCTAGTTAGGATAACTTTTATTATGCCAACTGTGGGCACCTACCTTCTTGCTCATGACAAGGACCAAGGGAACCATGGCTGAAAATGCAGGGGTTTTATGGGAATGAGAAGCTGGCAGAAGGAAAACCCACGAGCTGGAGAGGTTTAGGGGAGGGGTGGGGTGAGAGGAGTTGAGAGGAGCCCAGGTACTGAGTGAGCCTGGAGACAGGATGCACTTTGATGGGCTAAAAGATGACACCTATAGCCTGTGTCCCTTTAAGACATTGGTAAGTAAAGCTCCTGTGGTAGAGAGAAGGGGGCCACCAGAATCTGCGGGAGTTTCCTTTGGACCTGACAAAAGGCAAAAGCAAAAAGACCAGAAGTATTGACTCAGCCTAATATAATGACAGCAGCCTATGATCTCAGTACTCCAGAGCTGAAGCACCTTACCTTGGGAATGAATTCAAGGTCAGCCTAAGCAACTCTGTGAGACTCTCTCAAAGTTAAAACAACAACAAAGCAACAAATAAGGCTGGGGGCGTGGCTCAGTGGTAGAGCACATGCCTAGAATCCTCCAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCTCCAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCTCCAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTCAAATCCCCCAGTGAGGGGATGGGGTGTGGCTCAGTGGTAGAACCCCTGCCTCAAATCCCCCATGAGGGGCTGGGGTGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCCCAGTGAGGGGCTGGGGGTGTGACTCAGTGGTAAAGCCCCTGTCTGGAATCCCCCAGTGAGGGGCTGGGGTGTGGCTCAATAGCAAAGTGTTTGCTAAGCATGATGGGCACCCTGAATTCCATCTCCAGTAGCATAGAAGAAAAGGAAAAAGAAAAAGACTAATCCTGCAAGGAGACAGAGTCGGTAGGATGAAGCCATCACCACTTGTCCCCTCCACCCCTGCTCTGTCCTTCCCTTTTGCTCTCTGGTGACCTGCCTCTGATCTCATGCACACTATGGCCCAGGCTTGTGGGATCCTCCTGCCTCAGCCTTTCAAGTGCTGGCATTAGGGACCTCCACTCTTGCTACCAGCAGGCTCTGTAGCTGTGGGGAATTTCCCATGTGCTTACCTCCAGAGGTTGGAAACCTGTCCTAGATTTTCTATGGCTCACACCTGTCACCCTAGCACTCGAGGGGCGGGGCGGGGCAGGGCGGGGCAGGTGCTGAGACAGGAGGATTGCTATGAATTTAAGGCCAGCCTTGGCAACATAGTGTGTTATAAAGGCCAGTCTGGGCTATGGAGTGAGACTCAGTCTAATAAAAGCAAAAATAAATAATATCAAGAGTCTGGCTGAGCTGGGAAGCAAACACGATCGAGCAAGGCCTTTTGGTGAATCTTAGGGGACTGGACAGGCACGTCCGGACGGGGCGGGCGGGTGTTGATTTGACACCTGGAAATGACCTGGTTAGCCAACATTCTAGACTCACGCAGTTCACGTCCAAGCATTGAGTCAACAGGCCTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGCACGCGCACTCCTGTGTTAACACATGCATGTATGCCTCTACAAGCACTTACCTGTGCATGTGGAGACCAGATCAGCAATCATTGTCTTCTATGTGATGTCAGGTGTCTTCCTGTATCGTCGTTTTCTGCCTTAGTTTGAGAAAGAGTCTTTCAGGGTTGGTGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCACAAGGCCCTGGGTTCAGTCCTCAGGTTCAGTCCTCAGCTCTGGAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCTTTCATTGAACCCAGAGCTCACAGTCAGGCTGCACTGGCTGGCTGGCAGGCTCTGAGGATGTTCCGGTTCTGACCCAGCCCCCAATGCTGGGATTACAGACCCCCTGCCAGGCTTCTCCATGGTGCTGGGTGGGACTGAGGAGCTAACGCATGTGCTGCAGGTACGTTACCCACTGAGCCATCTGCTTAGAGCTTCCTTAATTTTATTTTTAATCCGTGTGCCTGAGTCTGAGCCTGAGTCTGAGTCTGAGTCTGTGTGATGTGCACCACATTTGTGCAGGTACCCACGGAGGACAGACAGAGGGTGTCAGGATTTCCCAGAACTGGAGATGCAGGTATTTGTGAGCCGCCTATTGTAGGTGGTCTTCTACAAGAGCAGCTAGTGCTCTTAACCGCTGAACCAGCCATCAGTTCCTCTATCTTATTTTTGAGGCAAGGTCTCTCACTGAACCTACAGCTCACTGGTTAGTCTAGACTGGCTAGCAATTCCCCAATATCTCCTTATCTCTGCACCAGCTGTTGGGGTACAGAGACAGGTTGCCCTGTGGTCTGCCAAGCTATTGTGTGGGTGCTGGTGATTCAAGTGCAAGTGCTCACGTTTATACGGCAAGACCTTTAACTGCTGGGTTATGTCTCCAATCCGTATTTATGAAGCACTTCACACAGTGCAGACTAGCTCCAAACTCACAGCCATTCCACTGCCTCAGCCTCCTGAGTACTGAGAGAGCAGAAAAGTGTGCCCTGCCTGAGGACTGTATTTCTGCCTGCAGTTCTATGCTAAGTTGACTTTGTAAGCATACGCCCGTGCAGCATTCAGCCTCTAAGCTTTGATCTGTTTACAAGCTGCTTGATTTAATGCCCAAATCCTCTTGACTCAGAGTCTCTGAGCCTAAACCTGTGGTCAGGGTTACAGGCCTGGAGCCAAGGAAGCCAGAACTTTTGTCTCTTACCTGGAGGTGCACAATGCCTCCTTTGGAGACCGGTAGCAGAGCATACTCAGTGTTCCCAACCACACATCCTCCAGGATGAGGTGACGTAAGACTTCTGAAGAACTTGGGGAACCTGAAGACCTTGAGCCCCCCAAAATTTTCTTTCCCGTCACTCAGGTCTGGATCTGAAGTTGCTGGTCTCACCTGGACTTTGTTTAACTAATTCTTGGCATGCATGTTGGTCCCACCCTGGCTGCAAGTGACAAGGTTCACCTTCCTCTAGAATCTGTGGGTGGCAACCCCTTTGGGGTCTAATGACCTTTTCACAGGGGTCACCTAAGACCACAGAAAACACAGATATTTATTTACATTACAATTCATACCAGGAGCAAAATTACATGAAATAGCAATGAAGATAATTTTATGGTGTGTGTGGGGGTTGGAGGGGGGTCCCCACATAAGAATCTTTATTTTATTAAAAGATTTATTAAAGGATCACGGCATTAGGAAGGTTGAGAAGTACTGCTCTAGACATAGCCTTCAGTGTACAGAGGCTCCTGAACCTGATTGGAAGCACATGACAGTACCAGAGTCCAATCAAACCCCACTTAGAGTTTCCTATTTTGTTTTGTAGTGTTTTCTTCGTTTTTGTTGTTTTATTCTGAGACTGGTTTTTACCCTGTAGGCCAGGCTGGCCTTGAACCCATGCAGATCTGTCAGCCTCCAGAGACCTCAGATCGAAGGTGTCCCACTGTATACAGATTGGTTTTGGGTTTATTTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCATGTTTGTGCAGTTTGCAAAGGCCAATGAAACATCTAATCTTGACTGGAGTTACAGGGAGCTCTGAGCTCCCAAATATGGGTGCCGGAAACTAAACTCCAGTCCTCTGAAAAGCAGCAGCAAGGGCTTTTTTTTCTTTTTTCTTTTTTTTTTTTATTAACTTGAGTATTTCTTAATTACATTTCGAATGTTGTTCCCTTTCCCAGTTTCCGGGTCAACATCCCCCTAACTCCTCCCCCTCCCCTTCTATATGGGTGTTCCCCTCCCCATCCTCTCCCCATTACCGCCCTCCCCCCAACAATCACGTTCACTCAGGGTTCAGTCTTGGCAGGACCAAGGGATTCCCCTTCCACTGGTGCTCTTACTAGGCTATTCATTGCTACCTATGGGGTCAGAGTCCAGGGTCAGTCCATGTATATAGTCTTTGGGTAGGGGCTTAGTCCCTGGAAGCTCTGGTTGGTGGGCATTGTTGTTCATATGGGGTCTCGAGCCCCTTCAAGCTCTTCCAGTCCTTTCTCTGATTCCTTCAACGGGGGTCCTATTCTCAGTTCAGTGGTTCGCTGCTGGCATTCGCCTCTGTATTTGCTGTATTCTGGCTGTATCTCTCAGGAGAGATCTACATCCAGTTCCTGTTCGCCTGCACTTCTTGGCAGCAAGGGCTTTTAAGCACTGGATCATCTCCCCAACCATTCTGTTACTTTTGTTTCGTTTTTTGTTTGTAAGTTTCTCTTTGTAGCATTGGTTGGCTTGGAACTCACTTTGTAGACCAGGCTGGACTCCAACTGTAGTCCTCCGGCCTCAGTCTTCCCAGTAGCTGGGATCTCAGGCCTGTACCACTATGCCAAGCTGGAACTAATTTCTATCAACTAGTGGAGAAAAGAGGGATCTGTGATAAAGTAGAAGATGCCCTGGGATATTTTCAGGCAATGTGGAATGAAGTCAGCCACTGACCATATACATTCAGGCCTTAAGCTTGGTGTACTGTTACTTAGGCTAAAATATGTATATATAAAAGGGCTATTATTACCTATAGACCCTCAGCACAGGGTACTAATTACGCTGGAATTCTTCTGAGATTGTGAGAGGCTTTGGACTCTGGAATGAGGACCTCCCTCCCTTTCCTATGTCTCCCATAATGCTTCTGATTTTTCTATTGTTGTGGGGTTTTTTTCCCATCATTCCTCATTTGAGAACTTAAAACACATTTTCCCTCTAAAGGAACATCAAGTAAGGCATATTGGCTCACTCCGTAATCCCAACACCAAAACAGAAAGATTGGGCCACACAGTTTCTGGCTAGATTGAACTATAGGGTGAAATCATGTATCAAACAAACCCGAAAGAACCCGATGGGTGTTAGTTATTTATGCATACATGGTTGCAAGCATGCACCTAAGCTGCCCTCCGGGTAACCTGTTGTGCTTTCTTTCCTGGTAG
Seq C2 exon
CCATGGCCAGCGCCCAGGTTCCTTTCTCCTTTCCTCTGGCCCACTTCCTCATCTTTGTCTTCGTGACTTCCACCATCATCCACCTCCAGCAGCGAATAGTGAAGCTCCAACCCCTGTCAGAGAAGGAATTACCGATGACGACTCAAATGTCCTCGGGAAACACAGAAAGCCCAGAGATGCGACGGGACAGCGAGCAGCATGGGAATGGAGAGCTGCGGGGCATGTTCACGATCAATTCCATTGGCCGGCTGGGGAACCAGATGGGCGAATACGCCACACTCTTTGCACTGGCCAGGATGAACGGACGGCTTGCGTTCATCCCCGCATCCATGCACAACGCTCTAGCGCCCATCTTCAGGATCAGCCTCCCGGTGTTACACAGCGACACGGCCAAAAAGATCCCATGGCAGAATTACCATCTCAACGACTGGATGGAGGAGCGTTACCGCCACATTCCGGGACACTTTGTGCGCTTCACGGGATACCCGTGCTCCTGGACCTTCTACCACCACCTGCGCCCAGAGATCCTGAAGGAGTTCACCCTGCATGACCACGTGCGGGAGGAGGCCCAGGCCTTCCTGCGTGGTCTGCGGGTGAATGGGAGCCAGCCGAGTACTTTTGTGGGTGTCCATGTGCGCCGAGGGGACTATGTGCATGTCATGCCTAATGTGTGGAAGGGCGTGGTGGCTGACCGGGGTTACCTGGAAAAGGCCCTGGATATGTTCCGGGCACGCTATTCATCTCCAGTCTTCGTGGTTACAAGCAACGGTATGGCCTGGTGCCGGGAGAACATTAATGCTTCCCGAGGAGACGTGGTGTTCGCGGGCAATGGTATTGAGGGGTCGCCAGCCAAGGACTTCGCGCTGCTCACCCAGTGCAACCACACCATCATGACTATTGGGACCTTTGGGATTTGGGCTGCCTACCTGGCAGGTGGTGATACCATCTACTTAGCCAACTACACCCTTCCGGATTCTCCGTTCCTCAAAGTCTTTAAGCCAGAGGCAGCCTTCCTACCCGAATGGGTGGGCATCCCTGCCGATCTGTCCCCACTCCTTAAGCACTAACACCAGCCTGTCCTCGGTCCCACTTCCACCTCAAGGCAAAAGGAGTCACTTGTTACGTCGCAGGAAGAGCCTTCTGATGGGAAGAAGTGTGCCTTGGGCTGCCAACGAGAAGTACTAACATGTTCAGAAAGCATATTTACATGTTAGATGCGGCCAGCTCAGCTCCAACATTTGTTAACAGCTCAGACATCATCAGTGGCCCCTGTTCCTGAAGACTCCTAGCAGTGCCATCACCGTTTTTCAGCACAGCTGACCCATGGCGCCAGACGGGCTGCTACCCGCAGACAGCCACTTCCAGAGGCAGCAAGAAAAGGCACGCTATGGTCTTTTCTTTAGGTTCCTTTTGAAGGGTGAGACAAACTTGAGTCTGCCTACTTTTTTTTTTTTTTCCACGGTGGGGCAGCATGTGACAGGCAAGAGTCAGATAGGGAGCCTGAGCAAGGAGAGGAGGCCAGCTTGTCTTTTTATAGCAACTGCCTTCCCCCGACTGACTGGAGTCTGCTAAGAACCTTTGAAGGTGGTGACCTAGGAACTTCTCATAGTCTCTTAAGATTCTTTCTCTTTTTAAATTATGGGTGTATGTGTGGACGTGTGGAGTACCTTCAGAGGCCAGAGCTGGGTGTCGGATCCCTGGAAGTGGAGTCATAGGCAGCTGGCACTGCGAGAGGCAGGTCTCACCAGCAGCACACAGAGGACCAAAGGCAAGTCCAGTGAAAGCCACCCCTCTACAAGCATCCAGCTAGCTCCTCTGTCCCCTTGACAAGAGTTGTGTCACTGTGTGCCTACATGGCTCGTTATGAGTCAAGGGGAGGAAGAATGCTGGGATTGGTTTACCCTGGGATCCAAAGTAGGAGTTATTCACTGCACAAAGGCACTTGATCAAAAGGGATGTGGGAGCTACCATGAGCCCACAGTCCCCTCACCCAGTTGCTTGCCCTTGGGACTGGGTCCGCCAAGGACTCCTTCTTTACCTACTCTGTCCATCTGAGAAGACCTGTGTGGGCGGAATTCAGATGCACCGGTTGCATGTCTGCCTCTGCAGCCCTGGTAGGACACCTCCAATCCTAGGGAACCCCTCCAGATGTTTCAGAGTTATCTTACCATCTTGTTACACTTCAAGTGTGAGCACACACGATGCATCCCTCTCACAATTAAAAAATACAACCTATGCAGCTACCATTATGAAAACAGCCAGGGTGATCTGGGGGGAAGAGGCCTCGGAAAGGTGTTCTTTTTGGACAGCAGAAACCCAAGGTGTCTCTCCAGAACCCCTGCTAAGTTGGTAGTGCTGATCCTGTGCATAAGAAGTAGCCTGGAGTGGCCATGGTAGCACCTGACTTTCACCTTTGTACTGTGAAGGCTAAGGCAGGAGGCCCTACATCCTCAGGCCCTCTCTCAACAAAGAAAATTCTCAAACTGGGTATAGCAATGCACACCTGTGATCCTAGCATCAGGATCAGGAGTTGGAAGTCATCCCCAGCCACACAGGGAATGCAGATCAGTCTGAGCTGCATGAGACCCCCATCTCAGAAGTAGAAAGAAAATTGCAAAAATCTAGGCTCAACAGTGGTGGCATACACTTAAGGAGACAGAGGCCAATAGATCTCTGAGTTTGAGGCTAGCCTGGGCTACACAGAAATCTTATTTTTAAAAAATATATATTTTTTCAAAAATCCAAAACAAATAAAAATGTGCCTTTCCATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021011:ENSRNOT00000028519:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0153111=Glyco_transf_11=WD(100=91.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]