RnoEX0037156 @ rn6
Exon Skipping
Gene
ENSRNOG00000021011 | Fut2
Description
fucosyltransferase 2 [Source:RGD Symbol;Acc:2639]
Coordinates
chr1:101631635-101651668:-
Coord C1 exon
chr1:101651562-101651668
Coord A exon
chr1:101639581-101639684
Coord C2 exon
chr1:101631635-101634407
Length
104 bp
Sequences
Splice sites
3' ss Seq
ATTGCTCCTCATGTCTTCAGGAC
3' ss Score
8.98
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TGAAGAGCCAAGCTGGAAGGTACCCTGAGCCACCAGTCTGCAGAGCCACCCTGCCGTCCATTCGAAGGTCATTTCCCTGTTACCACAGCCAGAAGAGGTGCGTACAG
Seq A exon
GACTGCTGGAGACCCTGGAGAGAGGCCACCTTGATCTCCCCCGAGACTGGAGAGTCTCGCCGGAATCCTTACCTGCGAACTCTCAGCTAAGTTAAATCCAGCAG
Seq C2 exon
CCATGGCCAGCGCCCAGGTTCCTTTCTCCTTTCCTCTGGCCCACTTCCTCATCTTTGTCTTCGTGACTTCCACCATCATCCACCTCCAGCAGCGAATAGTGAAGCTCCAACCCCTGTCAGAGAAGGAATTACCGATGACGACTCAAATGTCCTCGGGAAACACAGAAAGCCCAGAGATGCGACGGGACAGCGAGCAGCATGGGAATGGAGAGCTGCGGGGCATGTTCACGATCAATTCCATTGGCCGGCTGGGGAACCAGATGGGCGAATACGCCACACTCTTTGCACTGGCCAGGATGAACGGACGGCTTGCGTTCATCCCCGCATCCATGCACAACGCTCTAGCGCCCATCTTCAGGATCAGCCTCCCGGTGTTACACAGCGACACGGCCAAAAAGATCCCATGGCAGAATTACCATCTCAACGACTGGATGGAGGAGCGTTACCGCCACATTCCGGGACACTTTGTGCGCTTCACGGGATACCCGTGCTCCTGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021011_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0153111=Glyco_transf_11=WD(100=91.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCTGGAAGGTACCCTGA
R:
TCCCGAGGACATTTGAGTCGT
Band lengths:
258-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]