RnoALTD0017028-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000022312 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:RGD Symbol;Acc:1564403]
Coordinates
chr3:11986852-11988264:-
Coord C1 exon
chr3:11988165-11988264
Coord A exon
chr3:11988160-11988164
Coord C2 exon
chr3:11986852-11986939
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTGTGCTGTTTTTCTGGCAGCAT
3' ss Score
9
Exon sequences
Seq C1 exon
CCGCCATGCAGCAGATGCTGACCGAGAGCTGTAAGAGCCGGCTCATCCAGATGGCCTATGAGTCCCAGAGGCAGAGCCTGGTGCAGCAGGCCTGTTCCAG
Seq A exon
GTAAG
Seq C2 exon
CATGGCTGAAATGGACAAGCGGTTCCAGCAGATTCTGTCATGGCAGCAGATGGACCAGAACAAAGCCATCAGCCAGATCCTTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022312-22-27,23-27-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATGGCCTATGAGTCCCA
R:
GCTGCCATGACAGAATCTGCT
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]