RnoALTD0029077-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000025711 | Spout1
Description
SPOUT domain containing methyltransferase 1 [Source:RGD Symbol;Acc:1563514]
Coordinates
chr3:8750593-8751193:-
Coord C1 exon
chr3:8751093-8751193
Coord A exon
chr3:8750976-8751092
Coord C2 exon
chr3:8750593-8750638
Length
117 bp
Sequences
Splice sites
5' ss Seq
GGGGTTAGT
5' ss Score
2.75
3' ss Seq
CCTTCCTTCCTTCCTTTCAGGGT
3' ss Score
13.68
Exon sequences
Seq C1 exon
TAGCTCTGCGGAGGTGTGGCCGGAAGAGGCGTGACTATTGGCAGGCGCGTGTTTTTCCTGGCAACATGGCGGAGCGCCCGGGGAAGCGTCCCTGTGGCCCG
Seq A exon
GTAGGTGGCGAACGGATGGGTTCCGGGGTAGTCCCGGGAGCTGCAGCGTCTCACAGTGGTGTCGGCCTGGGTCTTCTGCTACCTCCTCGCTCCTGGTCCGAGGCCTGAGCTTGTGGG
Seq C2 exon
GGTGAACACGGCCAAAGGGTTGAATGGCGAAAATGGAAGCAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025711-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTGCGGAGGTGTGG
R:
TCTGCTGCTTCCATTTTCGCC
Band lengths:
146-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]