RnoEX0085616 @ rn6
Exon Skipping
Gene
ENSRNOG00000025711 | Spout1
Description
SPOUT domain containing methyltransferase 1 [Source:RGD Symbol;Acc:1563514]
Coordinates
chr3:8750593-8751324:-
Coord C1 exon
chr3:8751093-8751324
Coord A exon
chr3:8750764-8750897
Coord C2 exon
chr3:8750593-8750638
Length
134 bp
Sequences
Splice sites
3' ss Seq
GCTTGTTTTCTGATTTCTAGGGC
3' ss Score
8.98
5' ss Seq
TGGGTACTT
5' ss Score
3.47
Exon sequences
Seq C1 exon
TGCTGTGAACTCGTTGCCCTGGAGACAGGACACCAGAGCTGCAGCCTCCGAACAGGCAGGTGGAGTTTCCGAGCTCCACCTCAGCCTGGCTCCGAGGATACGCCCCACGTTCGGCTGAGTCTCTGATTGGGTAGCTCTGCGGAGGTGTGGCCGGAAGAGGCGTGACTATTGGCAGGCGCGTGTTTTTCCTGGCAACATGGCGGAGCGCCCGGGGAAGCGTCCCTGTGGCCCG
Seq A exon
GGCGGCTTTATGGACAGACCTGTGTTCCCCTCCCCTCAGTTTCTTCTTTTGCCCCATGGAAATTCATTCCTCAACTTCCTGGTTGCTTACTGTGCCGGACCTGATCCCAGGCATTGTGCACAGCGAGTCCCTGG
Seq C2 exon
GGTGAACACGGCCAAAGGGTTGAATGGCGAAAATGGAAGCAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025711_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.289 C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000030623fB14243
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACTCGTTGCCCTGGAG
R:
ATTCAACCCTTTGGCCGTGTT
Band lengths:
253-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]