RnoALTD0030098-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:93901201-93962757:+
Coord C1 exon
chr10:93901201-93901272
Coord A exon
chr10:93901273-93901383
Coord C2 exon
chr10:93962609-93962757
Length
111 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
TTGCTGTCTTCTTGCTGCAGGTG
3' ss Score
11.05
Exon sequences
Seq C1 exon
GTGGCATCTCCACAGAAAGTGATTGTGCTTTTGAGCCAGACTACGCCGTTCCAGCACTTCCAGTGAGTGAAG
Seq A exon
GTATGCAGCACATTCGGATTATGGAGGGCGTGTCTCGCTCTCTTCCATCCTCCCCCTTACTCACACATCAGTCTATCAGTGTTCGGCTCCAACCTGTGAAGAAGTTAACTG
Seq C2 exon
GTGATGTTGAACAGGAACTTGGCCCACCTCCATCTGTAGATGAGGCAGCAAACACACTCATGACTCGTCTGGGTTTCCTCCTTGGAGAGAAAGTCACAGAAGTACAACCAGGTGACCAATACAGCATGGAGGTACAGGATGAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840-11-14,12-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.766 A=NA C2=0.728
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAAGTGATTGTGCTTTTGAGC
R:
CTGATTTTCATCCTGTACCTCCA
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]