BtaALTD0021507-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48183323-48269641:+
Coord C1 exon
chr19:48183323-48183394
Coord A exon
chr19:48183395-48183505
Coord C2 exon
chr19:48269493-48269641
Length
111 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
TCAATGCCTTCCTGTTGCAGGTG
3' ss Score
11.3
Exon sequences
Seq C1 exon
GTGGCATCTCCACAGAAAGCGACTGTGCTTTTGAGCCAGACTACGCCGTCCCACCACTTCCCGTGAGTGAAG
Seq A exon
GTATGCAGCACATTCGGATTATGGAGGGCATGTCTCGCTCTCTTCCATCCTCCCCCTTACTCACACATCAGTCTATCAGTGTTCGGCTCCAACCTGTGAAGAAGTTAACTG
Seq C2 exon
GTGATGCTGAACAGGAACTTGGTCCCCCTCCATCTGTAGATGAGGCAGCAAACACACTCATGACTCGTCTGGGTTTCCTCCTTGGGGAGAAAGTCACGGAAGTTCAGCCAGGTGACCAGTACAACATGGAAGTCCAGGATGAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249-3-5,4-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.913
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCCACAGAAAGCGACT
R:
CTGATTTTCATCCTGGACTTCCA
Band lengths:
218-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development