DreALTD0020119-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22595285-22630368:+
Coord C1 exon
chr3:22595285-22595463
Coord A exon
NA
Coord C2 exon
chr3:22630220-22630368
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TCTGTGTTATTCTCTTACAGGGG
3' ss Score
11.38
Exon sequences
Seq C1 exon
TGACTCCGTGGAGGGCGAGTGTGTGTTCGAGGGGGATTACGCTGTCCCTCCTCTCCCGGTGACCGAGGGCATGCAGCACATTCGGATCATGGAGGGCGTGACACGCTCTCTCCCCTCCTCTCCTCTGCTGTCCCATCAGGCCCTCAACATGCGTCTGCAACCCATCAAGAGACTGCCAG
Seq A exon
NA
Seq C2 exon
GGGATGAAGGGCAGAATTTGGGTCCTCCTCCTTCTGTAGACGAGGCTGCAAACACACTGATGACGCGACTGGGGTTCCTGCTGGGGGATAAAGTGAATGAAGGGCCTGCTGGAGCACAATACACCATGGAGGAGCAAGATGACCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097-10-17,11-17-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.758 A=NA C2=0.740
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACCCATCAAGAGACTGC
R:
CAGTCGCGTCATCAGTGTGTT
Band lengths:
95-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]