RnoALTD0030101-4/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000030245 | Tango2
Description
transport and golgi organization 2 homolog [Source:RGD Symbol;Acc:1310348]
Coordinates
chr11:86797553-86815806:+
Coord C1 exon
chr11:86797553-86797653
Coord A exon
chr11:86797654-86797772
Coord C2 exon
chr11:86815713-86815806
Length
119 bp
Sequences
Splice sites
5' ss Seq
ACGGTACTG
5' ss Score
5.88
3' ss Seq
TTGTTCTCCTTTTCCCACAGACC
3' ss Score
12.63
Exon sequences
Seq C1 exon
GGCGGTGAGTGAGCGGCGGGTGGCTGGGGCTAGCAGTCTGCGCTCCTGGCGGGGCTGACCCACGGTCGGGCTCCGGGCTCTTGGAACGCGGTCTGGACCAG
Seq A exon
GTTGGTCGAGGTCGAGGCGGTTCTCACCTTCTCGTCCTAACTCAGTTTTCCCTTTCCAAGGCTCGGGACTCTAGTCCGACAGACCAGCCTGTCTCTGACAATTGAAAGCAACCCACACG
Seq C2 exon
ACCTCGTGACCGTGCGAGCAAAGCCACCCCTGCAACCCATGTGCATCATCTTCTTTAAGTTCGATCCTCGTCCCGTTTCCAAAAATGCGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030245-0-1,1-1,2-1,3-1-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF057427=NRDE=PU(6.6=94.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGGGCTAGCAGTCT
R:
ACGCATTTTTGGAAACGGGAC
Band lengths:
170-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]