RnoEX0088561 @ rn6
Exon Skipping
Gene
ENSRNOG00000030245 | Tango2
Description
transport and golgi organization 2 homolog [Source:RGD Symbol;Acc:1310348]
Coordinates
chr11:86793908-86824141:+
Coord C1 exon
chr11:86793908-86794179
Coord A exon
chr11:86815713-86815806
Coord C2 exon
chr11:86824053-86824141
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTCCTTTTCCCACAGACC
3' ss Score
12.63
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
ATTGGATGGATGTGCAGAGATTGCGGCTTGCTGTTGGGCTCCTAGTATTGTCAGTCTTAGCCGAAGATCGGCCTCCCTGAGGAGCAGGCCGAGGCCCTGACACCTGCCCGGAATGCTGTGGCTGCAACAGCCGCAGGAGGCTAGGAGTTGCCCACTCCCGGCCACCTTCGGAGGAATTCTGGGGATAGTAGACTCTGAGCTGGAGCTTGCAGGACCGGCGGTCACTCCCGGATTCCAGAAGCATTGACTCCATCTCCACCCCAAGTTGGCAG
Seq A exon
ACCTCGTGACCGTGCGAGCAAAGCCACCCCTGCAACCCATGTGCATCATCTTCTTTAAGTTCGATCCTCGTCCCGTTTCCAAAAATGCGTACAG
Seq C2 exon
GCTCATCCTGGCAGCCAACAGAGATGAATCCTACCACAGGCCGTCCAAGTTGGCAGACTTCTGGGAGAACAACAGCGAGATCCTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030245_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF057427=NRDE=PU(6.6=94.7)
C2:
PF057427=NRDE=FE(11.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCTTCGGAGGAATTCTG
R:
TGTTCTCCCAGAAGTCTGCCA
Band lengths:
183-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]