GgaEX0002504 @ galGal4
Exon Skipping
Gene
ENSGALG00000002056 | C15H22ORF25
Description
chromosome 15 open reading frame, human C22orf25 [Source:RefSeq peptide;Acc:NP_001007837]
Coordinates
chr15:1255639-1261368:+
Coord C1 exon
chr15:1255639-1255739
Coord A exon
chr15:1258281-1258398
Coord C2 exon
chr15:1261280-1261368
Length
118 bp
Sequences
Splice sites
3' ss Seq
GATCTGCATTTCCTTTGTAGGCT
3' ss Score
9.19
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CGGGGCTCCCGCAGCCAATCGGGGCGGGTGTCTCTTTAAACTCTCCGTGCTCCCCGGAAGCCGCTCTGTCGGGCCGTGGTGGTGTCCTCGGCGCCCGCTGG
Seq A exon
GCTGTTACAGGATGACCTTGTGCTGAGCTTTTGTAGAAAAAACGAGACTTAATCATTCTTCAATGTGCATCATTCTGTTCAAATTTGATCCACGGCCGGTTTCAAAAAATGCCTACAG
Seq C2 exon
ACTTATTCTAGCAGCTAATAGAGATGAATTTTACAGTAGACCATCCAAATCAGCAGATTTTTGGGACAGCAGCAATGAAATCCTGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002056-'6-2,'6-0,8-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF057427=NRDE=PU(30.5=94.7)
C2:
PF057427=NRDE=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCGGGTGTCTCTTTAAAC
R:
CACTCAGGATTTCATTGCTGCTG
Band lengths:
170-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]