Special

DreEX6010959 @ danRer10

Exon Skipping

Gene
Description
transport and golgi organization 2 homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040808-42]
Coordinates
chr5:26086486-26097307:+
Coord C1 exon
chr5:26086486-26086523
Coord A exon
chr5:26087183-26087327
Coord C2 exon
chr5:26097219-26097307
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTTCTATCCAAAAGTCA
3' ss Score
4.18
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GGCACAATGAATTGTCATCATTGACAACACATGGATTC
Seq A exon
TCATGGTCTCATTCTCTTCATCCAGCACCTAGCGCATCCAGTCTCTGACCTCACTGTGATTGAAAACTCCTGCCATCAGTGACCTCCTCATGTGCATCATCTTCTTGAAGTTCGACCCTCGGCCTGCATCCAAAAATGCCTACAG
Seq C2 exon
GCTCATTCTGGCTGCTAACAGAGATGAGGTCTACAGCAGACCGTCCAAAGCTGCAGAATTCTGGGGCAGCAGCAGCGAGATCCTCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056550-'1-4,'1-0,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref, Alt. ATG (>10 exons))

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=0.000 C2=0.066
Domain overlap (PFAM):

C1:
NA
A:
PF057427=NRDE=PU(6.7=94.7)
C2:
PF057427=NRDE=FE(11.2=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCATTGACAACACATGGATTC
R:
CTGAGGATCTCGCTGCTGCT
Band lengths:
111-256
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]