GgaEX0002504 @ galGal3
Exon Skipping
Gene
ENSGALG00000002056 | Q5ZI44_CHICK
Description
NA
Coordinates
chr15:1273443-1279172:+
Coord C1 exon
chr15:1273443-1273543
Coord A exon
chr15:1276085-1276202
Coord C2 exon
chr15:1279084-1279172
Length
118 bp
Sequences
Splice sites
3' ss Seq
GATCTGCATTTCCTTTGTAGGCT
3' ss Score
9.19
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CGGGGCTCCCGCAGCCAATCGGGGCGGGTGTCTCTTTAAACTCTCCGTGCTCCCCGGAAGCCGCTCTGTCGGGCCGTGGTGGTGTCCTCGGCGCCCGCTGG
Seq A exon
GCTGTTACAGGATGACCTTGTGCTGAGCTTTTGTAGAAAAAACGAGACTTAATCATTCTTCAATGTGCATCATTCTGTTCAAATTTGATCCACGGCCGGTTTCAAAAAATGCCTACAG
Seq C2 exon
ACTTATTCTAGCAGCTAATAGAGATGAATTTTACAGTAGACCATCCAAATCAGCAGATTTTTGGGACAGCAGCAATGAAATCCTGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002056-'3-1,'3-0,5-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF057427=NRDE=PU(30.5=94.7)
C2:
PF057427=NRDE=FE(11.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCGGGTGTCTCTTTAAAC
R:
CACTCAGGATTTCATTGCTGCTG
Band lengths:
170-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]