Special

HsaEX6025851 @ hg38

Exon Skipping

Gene
ENSG00000183597 | TANGO2
Description
transport and golgi organization 2 homolog [Source:HGNC Symbol;Acc:HGNC:25439]
Coordinates
chr22:20021069-20043443:+
Coord C1 exon
chr22:20021069-20021246
Coord A exon
chr22:20036760-20036854
Coord C2 exon
chr22:20043355-20043443
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCCTTTTCCCGCAGACC
3' ss Score
13.61
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGTACTGGGCTGGCTGCGGTGGCGCGCGGGCGCGGCACCCGGAAGTCGGCGGCGGTGGCGGAGGCGGTGAGTGCGCGGCTCCGGGGCTGGCCGACTCCGCTAGTGGCCCGGCCGGCCTGGGCTCGGGGGCTCCGGGCTCTGGGCTCTGGGTGCGCGGACCGGGCCAGGCTGCTTGAAG
Seq A exon
ACCTCGCGACCTGTGTCAGCAGAGCCGCCCTGCACCACCATGTGCATCATCTTCTTTAAGTTTGATCCTCGCCCTGTTTCCAAAAACGCGTACAG
Seq C2 exon
GCTCATCTTGGCAGCCAACAGGGATGAATTCTACAGCCGACCCTCCAAGTTAGCTGACTTCTGGGGGAACAACAACGAGATCCTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183597-'3-16,'3-15,12-16
Average complexity
C2
Mappability confidence:
94%=92=100%
Protein Impact

Alternative protein isoforms (Ref, Alt. ATG (>10 exons))

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=0.093 C2=0.000
Domain overlap (PFAM):

C1:
NA
A:
PF057427=NRDE=PU(20.0=94.7)
C2:
PF057427=NRDE=FE(11.0=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCGACTCCGCTAGT
R:
GGATCTCGTTGTTGTTCCCCC
Band lengths:
175-270
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains