MmuEX1025469 @ mm10
Exon Skipping
Gene
ENSMUSG00000013539 | Tango2
Description
transport and golgi organization 2 [Source:MGI Symbol;Acc:MGI:101825]
Coordinates
chr16:18316646-18343902:-
Coord C1 exon
chr16:18343798-18343902
Coord A exon
chr16:18324357-18324450
Coord C2 exon
chr16:18316646-18316734
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTCCTTTTCCCACAGACC
3' ss Score
12.63
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CGGAGGCGGTGAGTGTGCAGCGGGTGGCTGGGGCTAGCGGGCTGCGCTCCTGGCGGGGCTGACCCAAGGTCGGGCGCCGGGCTCCTGGAACGCGGTCTGGATCAG
Seq A exon
ACCTTGTGACCGTGTGAGCAAAGCCACCCTTGCAACCCATGTGCATCATCTTCTTTAAGTTTGATCCTCGTCCTGTTTCCAAAAATGCATACAG
Seq C2 exon
GCTCATCTTGGCAGCCAACAGAGATGAATTCTATAACAGGCCGTCCAAGTTGGCAGACTTCTGGGGGAACAACAGTGAGATCCTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013539-'2-12,'2-9,11-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF057427=NRDE=PU(11.9=94.7)
C2:
PF057427=NRDE=FE(11.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCGGTGAGTGTGCAG
R:
GTTGTTCCCCCAGAAGTCTGC
Band lengths:
176-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types