RnoALTD0034483-4/4 @ rn6

Alternative 5'ss

Gene

ENSRNOG00000004268 | Zfp386

Description

zinc finger protein 386 (Kruppel-like) [Source:RGD Symbol;Acc:2985]

Coordinates

chr6:143909828-143917575:+

Coord C1 exon

chr6:143909828-143909917

Coord A exon

chr6:143909918-143909948

Coord C2 exon

chr6:143914266-143917575

Length

31 bp

Sequences

Splice sites

5' ss Seq

TGGGTGAGG

5' ss Score

6.74

3' ss Seq

CTTGTTTTTATGTATTTCAGCTC

3' ss Score

9.01

Exon sequences

Seq C1 exon

TTGACCTTCCGAGATGTGGCTGTTGACTTCTCTCCGGATGAGTGGGAATGCCTGGACCCTCCTCAGCAGAGGCTGTACAGGGACGTGATG

Seq A exon

GTAGAGAACTACAGAAACCTGGTCTCTGTGG

Seq C2 exon

CTCTTTCTCATCATTGTACCCAGAACTTTTCACCAGAACAGATCCTAAAATATTCCTTCACAAAAGGAACTAATGGAAGTTGTGGCCTTAAGAGTTTATACTTAAGGGAAGATTGTATATATATAGATGAGAGTAAAGCCCACCATGGTAGAGATATGCAATGTCTAATTACAAGCAATACCAAAGATGTCATTGACAGCAGAGATCAAGAACACAAAACCGCTCTGACAATAACTCCTGTGAGGCCAGATACTTTGGATGAGCCAAGTATCTATAACTGTAAATATCCACAGGAAAGTTTTCAGCATGACTTAACTTTGAAAGAAAGTTTGGAAGATCTGATAGATGGGTTAATGTTTCACCCAAACAGTTCCATAGATAAAGAATTAAGAAGCAGAGGACTGATATCAACAAGTGATCAAATTGAGACTTTCTATACTGAAAGATCCTTACTCTTCAGTCAGCAAATAGCTATCTCCTATGACCCAAAGCACAATTCT

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000004268-5-11,6-11,7-11,8-11-4/4

Average complexity

Alt5

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.035

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

NA

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8)

Main Inclusion Isoform:

ENSRNOP00000005648