MmuALTD0016112-4/6 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000042063 | Zfp386
Description
zinc finger protein 386 (Kruppel-like) [Source:MGI Symbol;Acc:MGI:1930708]
Coordinates
chr12:116054722-116060592:+
Coord C1 exon
chr12:116054722-116054817
Coord A exon
chr12:116054818-116054848
Coord C2 exon
chr12:116058905-116060592
Length
31 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TTTGTTTTTATTTATTTCAGCTC
3' ss Score
9.19
Exon sequences
Seq C1 exon
GAGCAGTTGACCTTCCGCGACGTGGCCGTTGACTTCTCTCCGGATGAGTGGGAATGCCTGGACCCTCCTCAGCAGAGGCTGTATAGGGATGTGATG
Seq A exon
GTAGAGAACTACAGAAACCTGGTCTCTGTGG
Seq C2 exon
CTCTTTCTCATCATTGTACCCAGAACTTTTCACCAGAGCAGATCCTGAAATATTCCTTCACAGAAGTGACTAATGGAAGTTATAGCCTTCAGCATTTATACTTAAGGGAAGATTGTGCAAATGTAGGTGGGAATAAAGCAGCAGCCTGCCATGGTAGACATAAGCAATGTCTGATCACAAGCAATACCAAAGACAACAGAAATCAAGAACAGAAAACAGCTCTGAAAAAACCTCATGCAAGGACAGATACTTTTGATGAGCCATGTGTCTATAACTGTAAATATCCACAGGAAATTTTTCAACATGACTTAACTTTGAAAGAAAGTTGGGAAGATCTGATAGATAGATTAATTTTTCACTCAAGCAATTTCATAGACAAAGAATTAAGAAACAGAGGACCGATCTCTAAAAGTGATCAAGTCGAGTCTTCCTATCCTGGAAGAGCCATACTCTTCAGTCAGCAAATACCAGTCTCCTGTGGCCAAAAGCACAATACTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042063-5-4,6-4,7-4,8-4,9-4,10-4-4/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGCCGTTGACTTCTCTC
R:
GCTCTGGTGAAAAGTTCTGGGT
Band lengths:
115-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types