MmuEX1028469 @ mm10
Exon Skipping
Gene
ENSMUSG00000042063 | Zfp386
Description
zinc finger protein 386 (Kruppel-like) [Source:MGI Symbol;Acc:MGI:1930708]
Coordinates
chr12:116047724-116060592:+
Coord C1 exon
chr12:116047724-116047866
Coord A exon
chr12:116054722-116054848
Coord C2 exon
chr12:116058905-116060592
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCGTTTCTCTTTCAGGAG
3' ss Score
12.49
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ACAGAGCCTTGACAATATCGCGAGTCCACATCCCGTACGCGACCTTTGTGTTGGAAAATGTGAGCGTGTTTTCCAGCTTTTGGAAGCCCCGGTGGCCCTTACGAAATCACGGGTGCTGGAGATGCAGGAGAGCCATGGAGATG
Seq A exon
GAGCAGTTGACCTTCCGCGACGTGGCCGTTGACTTCTCTCCGGATGAGTGGGAATGCCTGGACCCTCCTCAGCAGAGGCTGTATAGGGATGTGATGGTAGAGAACTACAGAAACCTGGTCTCTGTGG
Seq C2 exon
CTCTTTCTCATCATTGTACCCAGAACTTTTCACCAGAGCAGATCCTGAAATATTCCTTCACAGAAGTGACTAATGGAAGTTATAGCCTTCAGCATTTATACTTAAGGGAAGATTGTGCAAATGTAGGTGGGAATAAAGCAGCAGCCTGCCATGGTAGACATAAGCAATGTCTGATCACAAGCAATACCAAAGACAACAGAAATCAAGAACAGAAAACAGCTCTGAAAAAACCTCATGCAAGGACAGATACTTTTGATGAGCCATGTGTCTATAACTGTAAATATCCACAGGAAATTTTTCAACATGACTTAACTTTGAAAGAAAGTTGGGAAGATCTGATAGATAGATTAATTTTTCACTCAAGCAATTTCATAGACAAAGAATTAAGAAACAGAGGACCGATCTCTAAAAGTGATCAAGTCGAGTCTTCCTATCCTGGAAGAGCCATACTCTTCAGTCAGCAAATACCAGTCTCCTGTGGCCAAAAGCACAATACTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042063_MULTIEX1-2/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8)
Main Skipping Isoform:
ENSMUST00000073551fB4659
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGCGACCTTTGTGTTGGA
R:
GCTGCTGCTTTATTCCCACCT
Band lengths:
254-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types