RnoALTD0034550-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000051578 | Zfp54
Description
zinc finger protein 54 [Source:RGD Symbol;Acc:1307738]
Coordinates
chr1:61313681-61318053:+
Coord C1 exon
chr1:61313681-61313781
Coord A exon
NA
Coord C2 exon
chr1:61317962-61318053
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TTGATTCCGTGATATTAAAGGTT
3' ss Score
5.22
Exon sequences
Seq C1 exon
ACAGCGGATGGGGACAGTAGATGGGTGTGGAGGAAGTGTGTTGAGTGGAGCGAGGTTAGAGGAGTGACGTGATAGCTGGGACTGTTCATTAGTGAGCCTAG
Seq A exon
NA
Seq C2 exon
GTTCACAAGCTGACTATTCACTGTTCTTCAAAGAGAAGATCAAAGAAGAGAAACAGCAAGAAATGGCTGATTCTTCAGTCAACACGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051578-0-3,1-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAGTAGATGGGTGTGGA
R:
CTGGGACGTGTTGACTGAAGA
Band lengths:
183-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]