RnoALTD0034551-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000051578 | Zfp54
Description
zinc finger protein 54 [Source:RGD Symbol;Acc:1307738]
Coordinates
chr1:61313984-61318053:+
Coord C1 exon
chr1:61313984-61314084
Coord A exon
chr1:61314085-61314172
Coord C2 exon
chr1:61317962-61318053
Length
88 bp
Sequences
Splice sites
5' ss Seq
ATAGTAGGT
5' ss Score
4.07
3' ss Seq
TTGATTCCGTGATATTAAAGGTT
3' ss Score
5.22
Exon sequences
Seq C1 exon
ATGGAACCGGATGGAACCGTAGCCCAGTGGGGGAGGACAGTAACCTCCCAGGTTAGAGGAGCTGAAGGGCTGGGAGGGAAACAAGCAGGAACTGGACAAGG
Seq A exon
GTGAGGTGTTTCCTCTGCTACTCACAAAGATGACAGCTCTCAAATTCTGCAGTACATGTCTTACCCTTGTCCATAAATTTAGAATATA
Seq C2 exon
GTTCACAAGCTGACTATTCACTGTTCTTCAAAGAGAAGATCAAAGAAGAGAAACAGCAAGAAATGGCTGATTCTTCAGTCAACACGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051578-2-3,3-3,4-3-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGGGGAGGACAGTAACC
R:
CTGGGACGTGTTGACTGAAGA
Band lengths:
169-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]