RnoEX0101507 @ rn6
Exon Skipping
Gene
ENSRNOG00000051578 | Zfp54
Description
zinc finger protein 54 [Source:RGD Symbol;Acc:1307738]
Coordinates
chr1:61309553-61318053:+
Coord C1 exon
chr1:61309553-61313781
Coord A exon
chr1:61315946-61316011
Coord C2 exon
chr1:61317962-61318053
Length
66 bp
Sequences
Splice sites
3' ss Seq
ACTATGTTTCTCTGGTTTAGAAC
3' ss Score
9.32
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATTTCTTTTCAAAATCCAAGTTCTTTAAATGTCTCTCACCAAGTCAGATGTTCAGGATTTGGTTTTGAATTGTCATTTTTGTGTGTTGGGGATGGGACTCTGGCTTTCTGAATTTAGCCTGTTATTGTTTGCAATAAGTATGTAGTTCACAGGCTGGTAGTCAAGCCGAGGTGTTAGGCTGTCTATCTTTTATCTGAAGGGTTCAGAACTCAGTGTGGGGGTGAGATATCGGGGTGTAACGTCCTACCAGATCCAGTTCTGGTCTAGGCTGACAGCAAACTTAACAGGGAGTCTGTGCAGAGCGGTCCAGAGAAGGTTGACAGCTGAAGCCTTGTGGAAGGCAGGCTGAGACTGAGAGGGAGGGACCGGTCTCCGGGGGGGTGGGGCCACTCGCCGGAAACAGCGGATGGGGACAGTAGATGGGTGTGGAGGAAGTGTGTTGAGTGGAGCGAGGTTAGAGGAGTGACGTGATAGCTGGGACTGTTCATTAGTGAGCCTAG
Seq A exon
AACTAACCAGGTAGACCAGGCTGGACTGGAACTCCAAACTATGTCTCTTGAGTGCTAAGATTAAAG
Seq C2 exon
GTTCACAAGCTGACTATTCACTGTTCTTCAAAGAGAAGATCAAAGAAGAGAAACAGCAAGAAATGGCTGATTCTTCAGTCAACACGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051578_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGTGGAGGAAGTGTGTTG
R:
CTGGGACGTGTTGACTGAAGA
Band lengths:
171-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]