RnoALTD0034628-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000048910 | Zfp709l1
Description
zinc finger protein 709-like 1 [Source:RGD Symbol;Acc:1596088]
Coordinates
chr7:10418602-10420368:-
Coord C1 exon
chr7:10420308-10420368
Coord A exon
NA
Coord C2 exon
chr7:10418602-10419907
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TGTTGTCTCTCCTTTAATAGACA
3' ss Score
8.85
Exon sequences
Seq C1 exon
GATACAAATTGGAAGACCTGAATAGTGAGGAACACTCTCCACGCTCTAGAAGATATGAAAG
Seq A exon
NA
Seq C2 exon
ACATAATATCTGTCACTCTGGGTATAAACCTTGTGAACGTAAAGGATATGGAAAGAAGCAATGTACCTTTGCAAGTAAAAGATTTCTTCAAATATATGAAAGCATCCATACTGAAGGGAATCCGTATGAATGTAAACAATGCAGTCAAATCTTTGCAAATTTATATCATCTTCAAAAACATGAAAAAAAACATACCAGAGAAAAACTATATGAATGTAATCACTGTGGTAAAGCCTTTCCAAGTCGCAATTCTCTTCAAATACACAACAGAACTCATACAGGAGAGAAACCCTATGATTGCAACCAATGTGGTAAAGCATTTACATGTAGCAGTAATCTTTTACTACACAAAAGAACTCATACAGGAGAGAAACCCTATGATTGTAATGACTGTGGTAAAGCATTTGCAAGTAGCAGTAATCTTCAAATTCATAAAAGAAAGCACACTGGAGAGAAACCCTATGGATGTAATCAGTGTGGTAAAGCCTTTGCATATAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048910-6-2,7-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.076
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF127602=Zn_Tnp_IS1595=WD(100=10.6),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF079757=C1_4=WD(100=10.8),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAACACTCTCCACGCTCT
R:
ACATTCATACGGATTCCCTTCAGT
Band lengths:
168-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]