RnoINT0168614 @ rn6
Intron Retention
Gene
ENSRNOG00000048910 | Zfp709l1
Description
zinc finger protein 709-like 1 [Source:RGD Symbol;Acc:1596088]
Coordinates
chr7:10418602-10420368:-
Coord C1 exon
chr7:10420308-10420368
Coord A exon
chr7:10419908-10420307
Coord C2 exon
chr7:10418602-10419907
Length
400 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TGTTGTCTCTCCTTTAATAGACA
3' ss Score
8.85
Exon sequences
Seq C1 exon
GATACAAATTGGAAGACCTGAATAGTGAGGAACACTCTCCACGCTCTAGAAGATATGAAAG
Seq A exon
GTAAATTTTATTTGAAAGTTGATACTAATGTATCACTGATTTAGTGGGAAACTTTAATGGAAAGTTTTGAAGAGAAGCAACAGTGGAAGTAAGCATAACTTTATGTTTGTTAATGATTATTAAATTCTCAGAAGACCATGTACTTCAGTTTTAGGTAGCTGACCTCCATTGGTGATTAGTTTACGTCCTAGACCTATTATAAGCAAATAGTTCACAGTAAAGCTAGTATTACTCATATACTTAAAATATTTGTTCCAAAGTATAGTGAAAGGAACAGTTTATAGGAAGTAAGAAAGTTGTTGTGGAAAAATCTTATTCCCTATAGCACATGTCTATGGGAACAAAATGTTAACCTGTGTGAATACACTGTGACTACCTTTTGTTGTCTCTCCTTTAATAG
Seq C2 exon
ACATAATATCTGTCACTCTGGGTATAAACCTTGTGAACGTAAAGGATATGGAAAGAAGCAATGTACCTTTGCAAGTAAAAGATTTCTTCAAATATATGAAAGCATCCATACTGAAGGGAATCCGTATGAATGTAAACAATGCAGTCAAATCTTTGCAAATTTATATCATCTTCAAAAACATGAAAAAAAACATACCAGAGAAAAACTATATGAATGTAATCACTGTGGTAAAGCCTTTCCAAGTCGCAATTCTCTTCAAATACACAACAGAACTCATACAGGAGAGAAACCCTATGATTGCAACCAATGTGGTAAAGCATTTACATGTAGCAGTAATCTTTTACTACACAAAAGAACTCATACAGGAGAGAAACCCTATGATTGTAATGACTGTGGTAAAGCATTTGCAAGTAGCAGTAATCTTCAAATTCATAAAAGAAAGCACACTGGAGAGAAACCCTATGGATGTAATCAGTGTGGTAAAGCCTTTGCATATAGCAATGCTCTTCAAAAACATGAAAGAAGTCATACTAGAGAGAAAATCTATGAGTGTAATCATTGTGGTAAAGCTTTTGCACGTCGTAGAAGTCTTCAAAATCATGAAGAACATCATACTCTTGAAAAACCATATGAATGTAGTCAATGTGGTAAAGCCTTTGCATATAGCAGTAATCTTTATATACATGAAAGAAGTCATACTGGAGAAAAGCCATTCAAATGTCCTCAATGTGGTAAAGCCTTTCCAAGTCACAGTTCTCTTCAAATACATGAAAGAACTCATACAGGAGAAAAACCCTATGACTGTAATGAATGTGGTAAAGCATTCGCATGTCGCAGTAATCTTCTACTACACAAAAGAACTCATACAGGAGAAAAACCCTATCATTGCATTAAATGTGATAAAGCATTTGCATGTAGCAGTAGTCTTCAAAAACATGAAAAAACTCACACTGGAGAGAAACCTTATAAATGTAATCAGTGTGGTAAAGCCTTTGCACGTCGAAGCGATCTGTATATACATGTAAGAATCCATACTGGAGAGAAACCATATAAGTGTAGTCAATGTGGAAAAGCATTTGTACATTGCATTAGTCTTCAGAGGCATGAACGAACTCACACTGGAGAGAAACCTTATGAGTGTAATCAATGTGGTAAAGCCTTTACACGTCGCTTTAGTCTTCAAGTACATGAAAGAAGTCATAGTGGAGAGAAACCTTATGAGTGTAATCAGTGTGGTAAAGCCTTTGCAAGTCGTAGTAGTCTTCGATATCATAGAAAACACCATACTGTTAAGAAACCAAATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048910:ENSRNOT00000047433:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.076
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF127602=Zn_Tnp_IS1595=WD(100=10.6),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF079757=C1_4=WD(100=10.8),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAACACTCTCCACGCTCT
R:
CCACATTGGTTGCAATCATAGGG
Band lengths:
347-747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]