RnoALTD0034628-2/2 @ rn6

Alternative 5'ss

Gene

ENSRNOG00000048910 | Zfp709l1

Description

zinc finger protein 709-like 1 [Source:RGD Symbol;Acc:1596088]

Coordinates

chr7:10418602-10420368:-

Coord C1 exon

chr7:10420308-10420368

Coord A exon

chr7:10420220-10420307

Coord C2 exon

chr7:10418602-10419907

Length

88 bp

Sequences

Splice sites

5' ss Seq

GAAGTAAGC

5' ss Score

6.95

3' ss Seq

TGTTGTCTCTCCTTTAATAGACA

3' ss Score

8.85

Exon sequences

Seq C1 exon

GATACAAATTGGAAGACCTGAATAGTGAGGAACACTCTCCACGCTCTAGAAGATATGAAAG

Seq A exon

GTAAATTTTATTTGAAAGTTGATACTAATGTATCACTGATTTAGTGGGAAACTTTAATGGAAAGTTTTGAAGAGAAGCAACAGTGGAA

Seq C2 exon

ACATAATATCTGTCACTCTGGGTATAAACCTTGTGAACGTAAAGGATATGGAAAGAAGCAATGTACCTTTGCAAGTAAAAGATTTCTTCAAATATATGAAAGCATCCATACTGAAGGGAATCCGTATGAATGTAAACAATGCAGTCAAATCTTTGCAAATTTATATCATCTTCAAAAACATGAAAAAAAACATACCAGAGAAAAACTATATGAATGTAATCACTGTGGTAAAGCCTTTCCAAGTCGCAATTCTCTTCAAATACACAACAGAACTCATACAGGAGAGAAACCCTATGATTGCAACCAATGTGGTAAAGCATTTACATGTAGCAGTAATCTTTTACTACACAAAAGAACTCATACAGGAGAGAAACCCTATGATTGTAATGACTGTGGTAAAGCATTTGCAAGTAGCAGTAATCTTCAAATTCATAAAAGAAAGCACACTGGAGAGAAACCCTATGGATGTAATCAGTGTGGTAAAGCCTTTGCATATAGCA

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000048910-6-2,7-2-2/2

Average complexity

Alt5

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (No Ref, Alt. Stop)

No structure available

Features

Disorder rate (Iupred):

C1=0.238 A=NA C2=0.076

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF127602=Zn_Tnp_IS1595=WD(100=10.6),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF079757=C1_4=WD(100=10.8),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSRNOP00000051405

Other Inclusion Isoforms:

NA

Other Skipping Isoforms:

NA

Associated events

Conservation

Human

(hg38)

NA:-

Human

(hg19)

No conservation detected

Mouse

(mm10)

NA:-

Mouse

(mm9)

No conservation detected

Cow

(bosTau6)

No conservation detected

Chicken

(galGal4)

No conservation detected

Chicken

(galGal3)

No conservation detected

Zebrafish

(danRer10)

No conservation detected

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

GAGGAACACTCTCCACGCTCT

R:

ACATTCATACGGATTCCCTTCAGT

Band lengths:

168-256

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

Special

RnoALTD0034628-2/2 @ rn6

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]