RnoEX0000509 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr1:66223511-66234686:+
Coord C1 exon
chr1:66223511-66226233
Coord A exon
chr1:66229785-66229939
Coord C2 exon
chr1:66234203-66234686
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCACTCTTTTACAGAGG
3' ss Score
10.34
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
AACTTTAAAGATATGTTTTAGAGTTTTATCAGTTTGCTTAAATCTCCTCAGCTTCAGATCCCTCATGTGTAAATGCCAGGAAAAAAAATAGTACCTACTTCACAGGGTTAATAAGTAAACAATTCAATCCTTCATAGCTCAGAAAAATGGAATTGGTGGTGAATATCCATTTTTATCTCTTTCTATAATTTGGATGGAATAGCTGCAGAGGTACCCAATTCTCTTGCACAGTCCCTTCCTCTTTGTGGTAAAAAACAGTCTTCAGTCTCCCCCCAAGAGGATGCACCTGCATGTAGATCCTCCCAAGTGACTGCTGCCTGCTGTACCTGCATAAAGTTTTTCTCTGTGTGATGTCACAAGGGAGGATGGTTGCCAGGGCAAAATGGTATCTTCAGAAGCCAAGGTTCTTTAGTCCTTACAGGTTGAAGACCATGCAGCTGGGAACTCCCACCCTCTATCCCCAACTGCACATGTCCACTCCTACATTTCATGTCTGAAAG
Seq A exon
AGGTTCATATTAGTACTTTATCCGGGAGTCTTTGCAAAAATCACAGTAAAAAGCCATCAATTACTTTTTCCCATAACATTTATTGACTATTAGATCCTGCAAAGGAGGGCACTAAATGTTACATCCTAAGTTGCCTGAAGCTCGAAGAGTCACAG
Seq C2 exon
ATCTCAAGTATACTGGCTCTCAGTTGTTGCTGCCTACATGATCAACCTCCAATAAGCACAACGGACTCTGGCTTAAGCTCAACCATGTTTCCTAGCAGACAATTTCACAGATCATCACAACTTCTGTTTGGCTTCTTCTGGACCATGCTGATATTGCTTTATATTCTTTTACATAATAAACCATAACCCTAATGGTACTGAATTTCGAGTCTGATAAGTCATCCTAGTGTTATCAATGGGGTAGCAGTGGATACCTCTGACAAAAAGACAGAGTGAATACTAGTAGGAAGAAAGGAAAGAAGGAAGGAAGGGACAGACAAATGAACAAATGAAGAGTATAGGACAAAGGGAGGGGAGGAAAGAAAGAAAGGGCTTAATGAATAATCATGCAGGACTTTGGCAAGTAATGTTTAAATAATTAGAGTTATAATTTACTTCTGTATTATAATGTGTGTGTGAGGGAGTATGGTAAAGTAGCACCAGA
VastDB Features
Vast-tools module Information
Secondary ID
Rn.187470_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCTCCCAAGTGACTGCT
R:
TAGGCAGCAACAACTGAGAGC
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]