RnoEX0000510 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr1:66223511-66234686:+
Coord C1 exon
chr1:66223511-66226233
Coord A exon
chr1:66232032-66232056
Coord C2 exon
chr1:66234203-66234686
Length
25 bp
Sequences
Splice sites
3' ss Seq
CCTGTATGGTTTTTCTCCAGTAT
3' ss Score
7.14
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
AACTTTAAAGATATGTTTTAGAGTTTTATCAGTTTGCTTAAATCTCCTCAGCTTCAGATCCCTCATGTGTAAATGCCAGGAAAAAAAATAGTACCTACTTCACAGGGTTAATAAGTAAACAATTCAATCCTTCATAGCTCAGAAAAATGGAATTGGTGGTGAATATCCATTTTTATCTCTTTCTATAATTTGGATGGAATAGCTGCAGAGGTACCCAATTCTCTTGCACAGTCCCTTCCTCTTTGTGGTAAAAAACAGTCTTCAGTCTCCCCCCAAGAGGATGCACCTGCATGTAGATCCTCCCAAGTGACTGCTGCCTGCTGTACCTGCATAAAGTTTTTCTCTGTGTGATGTCACAAGGGAGGATGGTTGCCAGGGCAAAATGGTATCTTCAGAAGCCAAGGTTCTTTAGTCCTTACAGGTTGAAGACCATGCAGCTGGGAACTCCCACCCTCTATCCCCAACTGCACATGTCCACTCCTACATTTCATGTCTGAAAG
Seq A exon
TATGAGTTCTCCGGTGTGCAATTAG
Seq C2 exon
ATCTCAAGTATACTGGCTCTCAGTTGTTGCTGCCTACATGATCAACCTCCAATAAGCACAACGGACTCTGGCTTAAGCTCAACCATGTTTCCTAGCAGACAATTTCACAGATCATCACAACTTCTGTTTGGCTTCTTCTGGACCATGCTGATATTGCTTTATATTCTTTTACATAATAAACCATAACCCTAATGGTACTGAATTTCGAGTCTGATAAGTCATCCTAGTGTTATCAATGGGGTAGCAGTGGATACCTCTGACAAAAAGACAGAGTGAATACTAGTAGGAAGAAAGGAAAGAAGGAAGGAAGGGACAGACAAATGAACAAATGAAGAGTATAGGACAAAGGGAGGGGAGGAAAGAAAGAAAGGGCTTAATGAATAATCATGCAGGACTTTGGCAAGTAATGTTTAAATAATTAGAGTTATAATTTACTTCTGTATTATAATGTGTGTGTGAGGGAGTATGGTAAAGTAGCACCAGA
VastDB Features
Vast-tools module Information
Secondary ID
Rn.187470_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGCACATGTCCACTCCT
R:
TTAAGCCAGAGTCCGTTGTGC
Band lengths:
115-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]