RnoEX0101545 @ rn6
Exon Skipping
Gene
ENSRNOG00000019127 | Zfp606
Description
zinc finger protein 606 [Source:RGD Symbol;Acc:1309810]
Coordinates
chr1:66231763-66237102:-
Coord C1 exon
chr1:66237010-66237102
Coord A exon
chr1:66234957-66235108
Coord C2 exon
chr1:66231763-66233744
Length
152 bp
Sequences
Splice sites
3' ss Seq
GGTATGTTGTTCTACCTCAGCTT
3' ss Score
3.75
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGAATCAGATTGCTAAGCCTGAAGTCATCTCCCTTTTGGAACAAGAAGAGCCATGGTCACTGGAGCAAGGATATCCTAAGAGCAGCTGTCCAG
Seq A exon
CTTCCTGCCAGAAATTGTTAGGACCTTGTATTTCCTTTATTTGTCAAGTCAATAACGAGCCTTTGTTGTGGGTCTTCAGAGAATCCCAGTTAGTTAATGGTTGTTCTGGATTGTTGACTTCGAGAACTACAAGATAATAAATCTGAGTTACT
Seq C2 exon
AGTGGATGAGAAATGTTGAAAGCAAAGCATTGATTCCAGCACAGAGTGTTTTTGAGGAAGAACAATCCAGCAATGGAATGGTGTTAGAAAGATACATATGGGATAATCCATGGCTCTCCAGGTTAGGAGTTTTGGGATATGGAGACCAAATAGAAATGTATCACATGAATCAGAACGCAGGTATGAGGGAAATGGTCTTCATGCAAAAACAAGTACTTTCTCAACGAGGTTCTGAATTCTGTAAACTTGGCACAGAGTACAGCCAAAGCTTAAACTTAATTCCACCTCAAAGAGTTTCTCAATTAGAACATTTCTACAAATCTGATACACATCTTGAAACTTGGAGATGTAATTCAGCCATAATGTATGCAGACAAAGTTACCTGTGAAAATATTGATTATGAAAAAGCCTTCTGCCAGTCTGTTCAGCCTGTTTACCCTGCAAAATTGCAAACTAGAGATAATATGTTCAAATGTACTGATGCTGTGAAGTCTTTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019127-'11-11,'11-10,12-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.6),PF139121=zf-C2H2_6=WD(100=4.1)
Main Inclusion Isoform:
ENSRNOT00000025981fB16973
Other Inclusion Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAGCCATGGTCACTGGA
R:
CCATTTCCCTCATACCTGCGT
Band lengths:
245-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]