RnoEX0001233 @ rn6
Exon Skipping
Gene
ENSRNOG00000060429 | AABR07002065.2
Description
NA
Coordinates
chr1:65590404-65599954:-
Coord C1 exon
chr1:65599860-65599954
Coord A exon
chr1:65591908-65591991
Coord C2 exon
chr1:65590404-65591322
Length
84 bp
Sequences
Splice sites
3' ss Seq
GCCTGCCTATCCTGATGCAGAAC
3' ss Score
7.93
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
TATCTCCAAGCACCCTCCTTCCAGCCCAGGGCCCTGAGGGACATCTTGAACATCAGGAAACAGCCTCCGTATCGTTCCAGCCAGGAAGAATCCAG
Seq A exon
AACTCTCAACTACCTTCCTGCACCAAGTCTGCCCGTGCACTGCCATGCTTCCCACCTTGCCAGTGATGGACTAACCTCCGAAAT
Seq C2 exon
GTGAGGAACTACATTTGTCTCCACACATCAGGGCTTCAGGAAAAGCCTTGGATTGCCCTGGTTCCCCACACATGCCTATGAGGGTCAAGCTGTCAAGGTCATCTTGGCGACATCTTGAAGTCAACCAAGGATACACAGATTGATCAAAAATTTTTTCTAAAGCAATAAATAAAGTGGATTAAACCACTTTGTACCTATAAAAAACCAAAGAAATGAGAGAATGTTAATGCTTGCAAGAATAAAAAGATTGAAGACTTGGAGTTAAGAGCACTGGCTGCTTTTGTGGAGGACCCAGGTTCAATTTCCAGCAACTACACGGTGGCTCACAACTGTTCATAACTTCAGTTCCAGGGATCTGGGGCCCATTTCTGCTCTGATGGGCACCAGACATGTGGTGCACTTGACATACATGCAGCTGAACACTCATAAAACAGATAACTCTTATTAAAATATATTTTAAAGGTGATTAAATGTACCGAATGAAAAGACATAGGGTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060429-'12-13,'12-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.854 A=0.286 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000026540fB10
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCAAGCACCCTCCTTCC
R:
GACCCTCATAGGCATGTGTGG
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]