RnoINT0000338 @ rn6
Intron Retention
Gene
ENSRNOG00000019623 | AABR07002065.1
Description
NA
Coordinates
chr1:65597103-65597899:-
Coord C1 exon
chr1:65597866-65597899
Coord A exon
chr1:65597660-65597865
Coord C2 exon
chr1:65597103-65597659
Length
206 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
GAATGTTCTTTCCTCCCTAGCAA
3' ss Score
7.5
Exon sequences
Seq C1 exon
ATGCCGGAGAAATACAACACAGTGGTATCCCAGG
Seq A exon
GTGAGGATCAATGGCCCTCCCTGTCCTACCTTCCCTGCCCCATCCTCCACACACCTCCCACATGTACTCGGCCCCCAACTGGGGCTCCCAGTGCAGTGGCCTAGCATCCAGCTGCATCTCTCTTCTACCAGAAAGTGCCCACTCCCATACTTTTGTGCAAACCCTTATGTGTCCAAGCCCCCAAATGAATGTTCTTTCCTCCCTAG
Seq C2 exon
CAAGCCTGCCGCTGCTACAGCCAGAGACACATGTTGACTCTGAGCTGAGACCAAAACAGGAGACCCCACATGAAGGATCAGAGTCCCTCGGGAGCCATCCCCCAGAAGTGGGAGCCATTGCAGATCCAAGGCTAGTTCAAGCCACTCCAAGTGAAAGACAGAGCCCTTGCAAGGACCCTCCAGGCTTGTCTCCTACACCACTGCTTGAAGCCCCAGCTAGGCCCACACCTCGGAAGCTGTATGTTTGTGAGCAGTGTGGCCTCAGCTTTGATTGGAAGTCAGTTTTCATCATTCATCTCCGCACACACACGAGAGGGCCAGGCCTGGAAAGACCATCACAGGTAGCCTGGGAGCCGGCCATGCGGCGCTCCCCTGGCCTTCGGGCCTATACCTGTGTGGAGTGTGGGCGCAGCTTCAGCTGGAAGTCACAGCTGGTCATCCACCGCAAGAGCCATGCAGGCCAGCGGCGCCACTTCTGCGGGGACTGTGGGTGTAGTTTTGACTGGAAGTTTCAGTTGGTCATTCATAGGAAGATCCACCAGCCAGAGGACCCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019623:ENSRNOT00000046708:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.459
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=12.4),PF0009621=zf-C2H2=WD(100=12.4),PF0009621=zf-C2H2=WD(100=12.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACACAGTGGTATCCCAGG
R:
TCCAATCAAAGCTGAGGCCAC
Band lengths:
297-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]