RnoEX0001684 @ rn6
Exon Skipping
Gene
ENSRNOG00000057837 | AABR07017236.2
Description
NA
Coordinates
chr15:18950595-18963244:+
Coord C1 exon
chr15:18950595-18950667
Coord A exon
chr15:18960480-18960696
Coord C2 exon
chr15:18963162-18963244
Length
217 bp
Sequences
Splice sites
3' ss Seq
ATTAGCATATTTAATGGCAGGTC
3' ss Score
4.8
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTCAAGAAGCTAAAAAATTTTGGGGAAGGCCTGGAGGACGGGACTCTGCCATGTGAAGCGGCCTCAGATGACT
Seq A exon
GTCTTCCTTAAAACAAAACGAGAACATAATAAATGATGGTTGTTTTGATGGAAAAATGAAAACTGAATTAAGAGGTAGAGAAAGGCAGTATCATGAAGAATTTGGAAGGTCACCTCTATACCATCAATGTAATGAAGAATTTGAAGTTGGTCAACATGAAATGTCCCTAGGGAATCTAAATATGAACTTAAAGGCTTTACACGACAGTGTGACACAG
Seq C2 exon
TTGCAGGAAGCGCAGTTGCAGGACGATCCACAGAGAGAAGGTGTCTTGAGCTCTGCAAGAATGGCACATCTGCTATGGAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057837-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=0.000 C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000092092fB41
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTTTGGGGAAGGCCTGGA
R:
GCAGATGTGCCATTCTTGCAG
Band lengths:
132-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]