RnoEX0002710 @ rn6
Exon Skipping
Gene
ENSRNOG00000058784 | AABR07044362.4
Description
NA
Coordinates
chr20:3170034-3188805:-
Coord C1 exon
chr20:3188718-3188805
Coord A exon
chr20:3187722-3187913
Coord C2 exon
chr20:3170034-3171859
Length
192 bp
Sequences
Splice sites
3' ss Seq
ACACCTTGGCCCCTGCACAGTGA
3' ss Score
4.52
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
TGGAATTACCTAATGCATCAGGGGCTCCCAGACAAGGTCCACTGTTCTACCTTAGTGTGCCAGTTGCTTTCTTTTTCCTTCTCACTAG
Seq A exon
TGATCTGGGATCTGCCTCCGGTCAAGAATCCCAGACCCTTTGCTACACTGAAGCTGGAGGACAAGTGTGCCTCTCCGGCCTGGGAAGGAGAAAAAGAAGAGCAAGAAGCAATTGACCCATTGCTGAAGTACAAACTGAAACGGACAGACGTAATGAACAGGCAGTGAGGACATTCCGAAAGTGGAACAAAAG
Seq C2 exon
GTGGTGGGCTCTGTCAGGATGAAGCTGAGCATCTCCTTCCCAGCCACTGGCTGCCAGCAACTCCTGGACAATGAAGCAAGCTCTGCCTATTCCAGAGGCGAGAGGTTACAGAAGTAGTTGCTGATCCTCTGGGTGAATAGTGGAGAGGCTACATGGTCTGAACCAGTGGTGGGAACAGCCGAGAAGGGTTTCCCTTGAAAGGGCCCAGCAAGGTGTGTGGACCTGCTGTTGTGTAAACCTCTTGTTAGAGACCAAAGAAAACCGGAGAGGGGCAGCCAGAGCCTGTCTGCAGTCACATTATGGATGCCGGTCTGATTTCTCAACTTGATTATCATAAGCGAAGGAGAGGAGACTCCCAGACAGAGAGACATGACTGTGCTTCAGCGGTTAGGACCCAGAAGAACTGCAGAAACTGAAAGCTTTTCAGTCTTTCTGAAGAGGCTGATGGTGTCGGCCAACACATTGTCAGAAAGTAAGCAGAGGGTGTAAGAAGCCGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058784-'6-5,'6-4,7-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGACAAGGTCCACTGTT
R:
GAAACCCTTCTCGGCTGTTCC
Band lengths:
255-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]