RnoALTD0000529-2/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000058784 | AABR07044362.4
Description
NA
Coordinates
chr20:3170034-3196377:-
Coord C1 exon
chr20:3196254-3196377
Coord A exon
chr20:3196239-3196253
Coord C2 exon
chr20:3170034-3171859
Length
15 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
TTCTTCTTCATGACTCCTAGGTG
3' ss Score
7.73
Exon sequences
Seq C1 exon
CCACCACAGCTCCAATGATCACAGCTCCAATAATGGCCACAGCAGAGACGGCTCCAACGACAACATAAATGACATTGGTTTCCATGTTGGAATCAGTGGATGAAGGAGGCTCTGGGAAGGACAG
Seq A exon
GTACAGGAAATGAAG
Seq C2 exon
GTGGTGGGCTCTGTCAGGATGAAGCTGAGCATCTCCTTCCCAGCCACTGGCTGCCAGCAACTCCTGGACAATGAAGCAAGCTCTGCCTATTCCAGAGGCGAGAGGTTACAGAAGTAGTTGCTGATCCTCTGGGTGAATAGTGGAGAGGCTACATGGTCTGAACCAGTGGTGGGAACAGCCGAGAAGGGTTTCCCTTGAAAGGGCCCAGCAAGGTGTGTGGACCTGCTGTTGTGTAAACCTCTTGTTAGAGACCAAAGAAAACCGGAGAGGGGCAGCCAGAGCCTGTCTGCAGTCACATTATGGATGCCGGTCTGATTTCTCAACTTGATTATCATAAGCGAAGGAGAGGAGACTCCCAGACAGAGAGACATGACTGTGCTTCAGCGGTTAGGACCCAGAAGAACTGCAGAAACTGAAAGCTTTTCAGTCTTTCTGAAGAGGCTGATGGTGTCGGCCAACACATTGTCAGAAAGTAAGCAGAGGGTGTAAGAAGCCGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058784-1-5,2-5,3-5,4-5-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGCTCCAACGACAACATA
R:
CAGCTTCATCCTGACAGAGCC
Band lengths:
105-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]