RnoEX0002709 @ rn6
Exon Skipping
Gene
ENSRNOG00000058784 | AABR07044362.4
Description
NA
Coordinates
chr20:3194090-3199279:-
Coord C1 exon
chr20:3199240-3199279
Coord A exon
chr20:3196254-3196377
Coord C2 exon
chr20:3194090-3194190
Length
124 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCTTCCTCACAACAGCCA
3' ss Score
8.08
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCACCCAGACGTCCTCTTTCCTACCTGGATTCTTAGCAG
Seq A exon
CCACCACAGCTCCAATGATCACAGCTCCAATAATGGCCACAGCAGAGACGGCTCCAACGACAACATAAATGACATTGGTTTCCATGTTGGAATCAGTGGATGAAGGAGGCTCTGGGAAGGACAG
Seq C2 exon
TCAGTTTTGGCTTCAAAGAGGCACTGGCCTCAGGGTCACAAGGGTCTTCAGACATCTGAATGCCTTCCCATAGAAGTTGGAAGCACTTTGAAGACAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058784-'0-2,'0-1,1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCAGACGTCCTCTTTCCT
R:
CCGTTTGTCTTCAAAGTGCTTCC
Band lengths:
139-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]