RnoALTD0000529-1/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000058784 | AABR07044362.4
Description
NA
Coordinates
chr20:3170034-3196377:-
Coord C1 exon
chr20:3196254-3196377
Coord A exon
NA
Coord C2 exon
chr20:3170034-3171859
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TTCTTCTTCATGACTCCTAGGTG
3' ss Score
7.73
Exon sequences
Seq C1 exon
CCACCACAGCTCCAATGATCACAGCTCCAATAATGGCCACAGCAGAGACGGCTCCAACGACAACATAAATGACATTGGTTTCCATGTTGGAATCAGTGGATGAAGGAGGCTCTGGGAAGGACAG
Seq A exon
NA
Seq C2 exon
GTGGTGGGCTCTGTCAGGATGAAGCTGAGCATCTCCTTCCCAGCCACTGGCTGCCAGCAACTCCTGGACAATGAAGCAAGCTCTGCCTATTCCAGAGGCGAGAGGTTACAGAAGTAGTTGCTGATCCTCTGGGTGAATAGTGGAGAGGCTACATGGTCTGAACCAGTGGTGGGAACAGCCGAGAAGGGTTTCCCTTGAAAGGGCCCAGCAAGGTGTGTGGACCTGCTGTTGTGTAAACCTCTTGTTAGAGACCAAAGAAAACCGGAGAGGGGCAGCCAGAGCCTGTCTGCAGTCACATTATGGATGCCGGTCTGATTTCTCAACTTGATTATCATAAGCGAAGGAGAGGAGACTCCCAGACAGAGAGACATGACTGTGCTTCAGCGGTTAGGACCCAGAAGAACTGCAGAAACTGAAAGCTTTTCAGTCTTTCTGAAGAGGCTGATGGTGTCGGCCAACACATTGTCAGAAAGTAAGCAGAGGGTGTAAGAAGCCGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058784-1-5,2-5,3-5,4-5-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGCTCCAACGACAACATA
R:
CAGCTTCATCCTGACAGAGCC
Band lengths:
105-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]