RnoEX0004142 @ rn6
Exon Skipping
Gene
ENSRNOG00000062252 | AABR07072853.4
Description
NA
Coordinates
chr3:10420246-10421345:-
Coord C1 exon
chr3:10421204-10421345
Coord A exon
chr3:10420985-10421129
Coord C2 exon
chr3:10420246-10420373
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGCCCTCTGCCCCTCCCCAGTGG
3' ss Score
9.62
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GCAGATGCCCACACTCACTTTCCAGAGAAGGGCAGATTCCTCAAGCTGCAGGCATTGAGCACAGCAGACGGCGGGGACTACAGCTGCACAGCCCGCAACACAGCAGGCAGCACCAGCGTGGCTTTCCACGTGGAGATTCACA
Seq A exon
TGGCACCCACCATCCAGCCAGGACCGAATGCTGTGAACGTCTCAGTGAACCGCACAACCCTGCTGCCCTGCCAGGCCCACGGTGTGCCCACGCCTCTCGTGAGCTGGCGGAAGGACGGGATCCCTCTGGACCCTGGGAGCCCCAG
Seq C2 exon
GCTAGAGTTTCTGCTTGAGGGCTCACTGAGGATCCATCCAGTCCTGGCACAGGATGCTGGACACTACCTCTGCCTAGCATCTAACTCTGCTGGCTCTGACCGGAAAGGCCTAGACCTTAGAGTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062252_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACACTCACTTTCCAGAG
R:
TCTAGGCCTTTCCGGTCAGAG
Band lengths:
250-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]