BtaEX6046715 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100746587-100747869:+
Coord C1 exon
chr11:100746587-100746728
Coord A exon
chr11:100746815-100746959
Coord C2 exon
chr11:100747742-100747869
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTGCCCCTCCTCCAGCGG
3' ss Score
9.29
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCGGATGCTCACACCCAGTTCCCCGAGGAGGGCAGATTCCTCCAGCTGCAGGCCCTGAGCACGGCCGACAGCGGCGACTACAGCTGCACCGCCCACAACGCGGCGGGCAGCACCAGCCTGGCCTTCCACGTGGAGGTCCACA
Seq A exon
CGGTGCCCGCCATCCAGTCAGGACCACCCACAGTGAACGCCTCCGTGAACCAGACGACCCTGCTGCCCTGCCAGGCAGACGGTGTCCCCCAGCCCCTCGTGAGCTGGCTGAAGGACGGGGTCCCCCTCGATCCCGGGAGCACCAG
Seq C2 exon
GTTTCAAGTTCTGCCTGAAGGTTCCCTGAGGATCCAGCCAGTCCTCGCCGAGGACGCTGGCCACTATCTCTGCCTGGCATCCAACCCTGCAGGTTCCGATCGGCAGGGTCGTGACCTCCAGGTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'78-85,'78-84,79-85=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.367 C2=0.250
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(56.2=93.8)
A:
PF0767911=I-set=PU(52.3=93.9)
C2:
PF0767911=I-set=PD(46.6=93.2),PF138951=Ig_2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATGCTCACACCCAGTTC
R:
GCCGATCGGAACCTGCAG
Band lengths:
245-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]