HsaEX6063493 @ hg19
Exon Skipping
Gene
ENSG00000148357 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:21293]
Coordinates
chr9:133271311-133273042:+
Coord C1 exon
chr9:133271311-133271452
Coord A exon
chr9:133271556-133271700
Coord C2 exon
chr9:133272915-133273042
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGTGCCCCTCCCCAGCGG
3' ss Score
9.79
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GAGGACGCCCACACACAATTCCCGGAGCGGGGCAGGTTCCTCCAGCTGCAGGCCCTGAGCACGGCTGACAGCGGCGACTACAGCTGCACAGCCCGCAACGCCGCAGGCAGCACTAGTGTCGCCTTCCGCGTGGAGATCCACA
Seq A exon
CGGTGCCCACCATCCGGTCAGGACCACCTGCAGTGAACGTCTCAGTGAACCAGACAGCCCTGCTGCCTTGCCAGGCCGACGGCGTGCCCGCACCCCTCGTGAGCTGGCGGAAGGACAGGGTCCCCCTGGATCCCAGGAGCCCCAG
Seq C2 exon
GTTTGAAATTCTGCCTGAGGGTTCCCTGAGAATCCAGCCAGTCCTTGCCCAGGACGCCGGCCACTACCTCTGCCTGGCATCCAACTCTGCTGGCTCCGATCGTCAAGGCCGTGACCTACGGGTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148357-'32-33,'32-32,33-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACACACAATTCCCGGAG
R:
TAGGTCACGGCCTTGACGATC
Band lengths:
253-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)