MmuEX6100354 @ mm9
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31280658-31281792:+
Coord C1 exon
chr2:31280658-31280799
Coord A exon
chr2:31280874-31281018
Coord C2 exon
chr2:31281665-31281792
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGCCCTCTTCCTCTCCCCAGCGG
3' ss Score
11.38
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GCAGATGCCCACACTCACTTTCCAGAGCAGGGCAGATTCCTCAAGCTGCAGGCGCTGAGCACCGCGGATGGTGGGGACTACAGCTGCACAGCCCGCAACAGGGCAGGCAGCACCAGCGTGGCTTTCCGTGTGGAGATCCACA
Seq A exon
CGGCACCCACCATCCAATCAGGACCGAACACTGTGAACGTCTCAGTGAACCGCACAACCCTGCTGCCCTGCCAGACCCACGGTGTGCCCACGCCCCTCGTGAGCTGGAGGAAGGATGGGATCCCTCTGCACCCTGGGAGCCCCAG
Seq C2 exon
GCTAGAGTTTCTGCCCGAGGGATCACTGCGGATTCATCCAGTCCTGGCACAGGATGCCGGACACTACCTCTGCCTAGCATCCAACTCTGCTGGCTCCGACCGGAAAGGCCTAGACCTCAGAGTCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'76-76,'76-75,77-76=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.408 C2=0.114
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(53.6=93.8)
A:
PF0767911=I-set=PU(52.3=93.9)
C2:
PF0767911=I-set=PD(46.6=93.2),PF138951=Ig_2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACACTCACTTTCCAGAGC
R:
TCTGAGGTCTAGGCCTTTCCG
Band lengths:
256-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: