RnoEX6044644 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:67976629-67978710:-
Coord C1 exon
chr13:67978569-67978710
Coord A exon
chr13:67977173-67977317
Coord C2 exon
chr13:67976629-67976756
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTGTCTCTTGTTCAGTTC
3' ss Score
9.23
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GCAACACCTCGAGTAAGAATCCTGTCTGGAGGCAGATACTTGCAAATTAATAATGCAGACCTGGGAGACACGGCCAATTATACCTGTGTCGCCAGCAACATCGCAGGAAAGACTACAAGAGAATTTATCCTCACTGTAAATG
Seq A exon
TTCCTCCAAGCATCAGTGGTGGTCCCCAGAGCCTTGTCACTCTCTTAAATAAGTCAATTGCCCTGGAATGCCTTGCTGAAGGCGTGCCATCACCCAGGATAACATGGAGAAAGGACGGTGTTGTTCTAGCTGAGAGCCATGCAAG
Seq C2 exon
ATACTCCATCTTGGAAAATGGATTTCTTCACATTCAGTCAGCACATATCACAGATACCGGACGGTATTTGTGTATGGCAACCAATGTGGCTGGAACAGACCGTAGGCGAATAGATTTACAAGTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'86-86,'86-85,87-86=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(52.9=93.8)
A:
PF0767911=I-set=PU(52.3=93.9)
C2:
PF0767911=I-set=PD(46.6=93.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACACCTCGAGTAAGAATCCT
R:
GTCTGTTCCAGCCACATTGGT
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]