BtaEX6070424 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015235 | HMCN1
Description
Bos taurus hemicentin 1 (HMCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192537]
Coordinates
chr16:68643280-68645454:+
Coord C1 exon
chr16:68643280-68643421
Coord A exon
chr16:68644663-68644807
Coord C2 exon
chr16:68645327-68645454
Length
145 bp
Sequences
Splice sites
3' ss Seq
CACATGCATCTCTTTTACAGTTC
3' ss Score
8.29
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GCAACACCTCGAATAAGAATCCTCTCTGGAGGGAGATATTTGCAAATTAATAATGCAGATCTAGGTGATACAGCCAATTATACCTGTGTTGCCAGCAACATTGCGGGAAAGACTACAAGGGAGTTTATTCTCACTGTCAATG
Seq A exon
TTCCTCCAAGCATAAAGAGTGGCCCCCAGAGTCTTGTCATTCACTTAAATAAGTCAACTCTATTGGAATGCTTTGCGGAAGGCGTGCCAGCCCCAAGGATAACATGGAGAAAGGATGGAGCTGTTCTATCTGGTAGTCATGCAAG
Seq C2 exon
ATACTCTGTCTTGGAAAATGGATTCCTTCGCATCCAGTCGGCACAAGTGACTGACGGTGGGCGATATTTGTGTATGGCCACCAGTGCCGCGGGGACAGACCGCAGGCGAATCGATTTACAGGTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015235-'77-85,'77-84,78-85=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.136
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(52.3=93.8)
A:
PF0767911=I-set=PU(52.3=93.9)
C2:
PF0767911=I-set=PD(46.6=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTGGAGGGAGATATTTGCA
R:
CTGTAAATCGATTCGCCTGCG
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]