RnoEX0004789 @ rn6
Exon Skipping
Gene
ENSRNOG00000015783 | Abca16
Description
ATP-binding cassette, subfamily A (ABC1), member 16 [Source:RGD Symbol;Acc:1563534]
Coordinates
chr1:190205908-190222104:+
Coord C1 exon
chr1:190205908-190206035
Coord A exon
chr1:190212042-190212183
Coord C2 exon
chr1:190221845-190222104
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTATTTGTTAATATTTTCAGGTA
3' ss Score
8.1
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
TTCGAGGGTTTCCTTCAGAAGTTGAGTTTGAGGAGTACATTCTGTTCGATTATACGTCTCAGAAAGTACTGGCTGCCATTGTTTTTGACTGTGATTTCAAAAACAAAACTGATCCTCTGCCACTTCAG
Seq A exon
GTAAAATATCACTTGCGTTTTGTTGGTGCACAGAGGACCATATGGTGGCCAGACAAGATAGGCTGGAAAACGAGACTTCTCTTTCCAAATCATCCTTCTCTAAAACCCAGGAATCCAAATTATCTTGACGGAGGAAGTCCTG
Seq C2 exon
GGTACATCAAGGAGGGATTCCTGGCAGTGCAGCATGCCGTGGACAAGAGCATCATGCTGTATCATGAAAGCCGTGCTGGGAAAGAGCTCTTTGAAAACATTGACACTCTGGTACAGAGGTTTCCATACCCAAGTCATCCCCAGGACAAACTACTTTGGATCTCCAGTCCCTTCATCCCACTAATGTTCATACTCATGTTCTCTTCCATCGTTCTTTCCATCATGCGATCCATTGTGTTTGAAAAGGAGAAAAGGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015783-'3-7,'3-6,5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(9.7=100)
A:
PF126982=ABC2_membrane_3=FE(10.9=100)
C2:
PF126982=ABC2_membrane_3=FE(19.9=100)
Main Skipping Isoform:
ENSRNOT00000001933fB299
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGAAAGTACTGGCTGCCA
R:
AGTGGGATGAAGGGACTGGAG
Band lengths:
252-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]