RnoEX0005344 @ rn6
Exon Skipping
Gene
ENSRNOG00000030216 | Abcg3l1
Description
ATP-binding cassette, subfamily G (WHITE), member 3-like 1 [Source:RGD Symbol;Acc:1303294]
Coordinates
chr14:6522166-6529686:-
Coord C1 exon
chr14:6529534-6529686
Coord A exon
chr14:6526828-6526964
Coord C2 exon
chr14:6522166-6522317
Length
137 bp
Sequences
Splice sites
3' ss Seq
GATGGTCATTGGTGCTTTAGCCT
3' ss Score
3.24
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
AATGATGTGGTGTTGGGCACAGTGACCGTGAGAGACAATTTAGAGTTCTCAGCAGCTCTCCGACTTCCAATGACTGTAACAAGAGATGAAAAAAGGAGGAGGATCAATGAGGTGCTTGAACTTCTTCATCTGGAAAAAGAACAAAATGTCAAG
Seq A exon
CCTAGATCCAAAGGACTCAGAAAAAGGACCAGTATAGCAATGGAGCTGGTCACTGAGCATCCCATTTTGTTCTTGGATGATCCCACCACTGGCTTAGACTTGAGAACTACGACTGATGTCATCTCAATCCTGAGAAG
Seq C2 exon
GATGTCGATGAAGGGAAAGACAATCATCTTCTCCATCAATCAGCCTCAGTACTCCATCTTCAGATTCTTTGATAGCCTCACCTTAGTGGCTTCAGGAAAACTCATGTTTCATGGACCTGCACGGGACGCTCTGGAGTACTTCACATCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030216_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.109 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(37.0=100)
A:
PF0000522=ABC_tran=PD(21.5=63.0)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000079795fB382
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCAGCAGCTCTCCGACTT
R:
TGAAGTACTCCAGAGCGTCCC
Band lengths:
251-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]