RnoINT0011122 @ rn6
Intron Retention
Gene
ENSRNOG00000030216 | Abcg3l1
Description
ATP-binding cassette, subfamily G (WHITE), member 3-like 1 [Source:RGD Symbol;Acc:1303294]
Coordinates
chr14:6526828-6529686:-
Coord C1 exon
chr14:6529534-6529686
Coord A exon
chr14:6526965-6529533
Coord C2 exon
chr14:6526828-6526964
Length
2569 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACG
5' ss Score
10.19
3' ss Seq
GATGGTCATTGGTGCTTTAGCCT
3' ss Score
3.24
Exon sequences
Seq C1 exon
AATGATGTGGTGTTGGGCACAGTGACCGTGAGAGACAATTTAGAGTTCTCAGCAGCTCTCCGACTTCCAATGACTGTAACAAGAGATGAAAAAAGGAGGAGGATCAATGAGGTGCTTGAACTTCTTCATCTGGAAAAAGAACAAAATGTCAAG
Seq A exon
GTAACGTGAGGAAAAATCTTGATTCAGAGAGGGGGAGGGGCAGAGGGAAGGGGATGTNGAACCAACAATGGTTCCCCTTGCAAGGTCCTTGGAAATGGAGGAGCTCTCACAGCAACAGGCGACCGTACCCGCAGATGTGAAGTACTCCAGAGCGTCCCGTGCAGGTCCATGAAACATGAGTTTTCCTGAAGCCACTAAGGTGAGGCTATCAAAGAATCTGAAGATGGAGTACTGAGGCTGATTGATGGGTAAGGTGGAAATTACACTGTGAAGCCTTCTAAACAACGGGTGAACCTGGGAAAGGAGAGCGAACCAGCAGGGAAAGGTGCTCCTCACACGGCCATTTCAAGTCTTCCTTACGTGACCCCTTTACCCTTAGTGCTACACTCATGACTCATTTGGGAATTTGATGAGTTCTGTTTTCTGTTCATCTTCCCTTCCTCTGGAGCAGTGGTTCTCATCCTTCCTAATACTGTGACCCTTTAATACAGTTCCTCATTCCTGGTCACTCACGAGCACAAAATCATTTTGGCGCTACCTCACAACTGTAATTTTGCTGTCGTTGTGAATTCTAATGAAAATCTCTGATCTGTGACCCCTAAGGGGGTCATGGCCCACCGGTTGAGAAGCCCTGACCCAGAGGCCTTTGTTCCCTTGTTGTTTCAAATGTATTTCTGGAACTGACCTCTTATGTGAGACTGAGGACCCTGGCTCTGTGCTTCATCTACTTTAACTTTCCTTCCAGGATTGAACTCATCTCTAGCATCTTCTTCCAACTTGTTAGGGCTTGTTATTTTTGTAGCCTCTTGTTTTGTGTTTTTATCTCATCCTATCTGGGATGGTTAGTTCAGACTGTTGAATAGACACAATCCACAATCACTTGGAATCACCTAGGAAATGAGGAATACTCTAGCCGTGTGGACATTACCACAGGTGCTTGTCCTCATAAGGAAATCCATGAGGAGAGACTCAGCCCACTGCAGCAGCACTGTTCTCTGGGCTTGGGTCCTGGGTGACAGAAGAAGGGAGTAGGTGAGCCGGGCACTGGCAGGCAGGCAGGCATGCATTCTCTCTGTGCTCCGGACTGCACGTAACCAGCTGCATCAGGTTCCTGCCTTGACGTCCCTGCAATGATTGACTGCACTCCTGAACTGTGCTCTGAAATAACCTTTCATCTCCATGTATACTTCTCACCAGAACATTTCATCTCAGCCACTGGATGGAAAACTAGGATATTCTCTTGCCCTTGCTCCCTGACGCCCTATCTTCTGACATCATTTACTCCCAGGTCTTAGGTTTCAGAGCTGCAGCCTTGGTCAAGAGCAACAGTGCATGGACCACCTGCCTTCTGTGGAAGCTCATGCAGGGCCGGGAAGACAATAGATGAGTGGTGAGCTTCACGGCCACCGTGTAATGGATAACATGTTTCTTACTGACATATTAAAAAATACTATGTAGTACTTCATTCCTGAATACTTAATTATTCTTCATCCTTTAACAAAGGGCATTTACTTATCTTAACTATTCCACATTATCTATCAAAATGGACAGAACCTTCATATCCTTAGCCTTGTCAGGGATATAACCATTTGCAATCCCCAAATTTAATTTATTATTTTATTGTTAATAAACCTAATTAGTAACTTTATTTATTATGTGTTTAAACTTTTCAAAAATTGGGTTCTTTACCTCTTCTTGGGTCCCTGAAAACTTCCCGCCTCTCACGGGATTCATTTAGAAAATCACATGTACATTGTTGGTGAGTGGACATTTGGTGCTATGGATGGAAATGGCTTCCTAGAAGGTAATTCTCATGGTTTAACTCCTGCACTAGCCCTTTCTTCCCGAGTGACAGAAATTTGTTTGGTTTGGCTCTGTATATAGCTTGGCTTTATATTTATTTATGGTAAGATACTTTTCTATTTTTGTTGTTGTTTTTCATAATAACTAGTCATTGCCCTAAGTTGCTTAGTTGTTGTTTTAAGGGACAAAAGATGGTGTTGGGAAATTCAAGAGATTTTTGACAATTTTAATTATATAACTTATAAACCATCAGTTTCAAAACAGTTGTGTGTGTGCACACGTGCGTGTGTGTATATATATGTGTGTGTGTATGTGTGTGAGTGTATGTGTGCATGTGTGTGTGCATGTGTATGTATGTGTGTATATATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTGGGGTGTTGTTAAATGATTACTAGAGATACTTTATCTTCTCCTTTGCTATCTTCCCCATTTCTGTCAACAGTGATCTCACTTTGCAGGTCTTTGTGTGTTATAATGCATCCCTAGAACATGTGACTTGATAAGGATCAAATAGTCAGCGTTATTAACATGGCTTCATGTCAAGTCTGACCTGAGCTTCATTCTACTCTCCAGTTAGAATAGAAACCTCCTTCTTCTCCCAGGTGTCCATATTTTGGCTCTTTGGGATAATGATTTAACACAACCTTTTATTGCTGGAATAATCTAGTTCACCAAACGACAGTGACTATGTACCCGTTGACAATGATGGTCATTGGTGCTTTAG
Seq C2 exon
CCTAGATCCAAAGGACTCAGAAAAAGGACCAGTATAGCAATGGAGCTGGTCACTGAGCATCCCATTTTGTTCTTGGATGATCCCACCACTGGCTTAGACTTGAGAACTACGACTGATGTCATCTCAATCCTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030216:ENSRNOT00000042532:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(37.0=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(21.5=63.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]