RnoEX6041488 @ rn6
Exon Skipping
Gene
ENSRNOG00000030216 | Abcg3l1
Description
ATP-binding cassette, subfamily G (WHITE), member 3-like 1 [Source:RGD Symbol;Acc:1303294]
Coordinates
chr14:6526828-6530287:-
Coord C1 exon
chr14:6530173-6530287
Coord A exon
chr14:6529534-6529686
Coord C2 exon
chr14:6526828-6526964
Length
153 bp
Sequences
Splice sites
3' ss Seq
GAATTCCATTTGCCCTTGAGAAT
3' ss Score
-1.78
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GTTATTAGATGTCTTAGCTGCAAGGAGAGATCCGTGTGGATTATCAGGAGATATTTTGATAAACGGTAAACCTCGACCTGCTAATTTCAAATGTACATCTGGTTATATACCACAA
Seq A exon
AATGATGTGGTGTTGGGCACAGTGACCGTGAGAGACAATTTAGAGTTCTCAGCAGCTCTCCGACTTCCAATGACTGTAACAAGAGATGAAAAAAGGAGGAGGATCAATGAGGTGCTTGAACTTCTTCATCTGGAAAAAGAACAAAATGTCAAG
Seq C2 exon
CCTAGATCCAAAGGACTCAGAAAAAGGACCAGTATAGCAATGGAGCTGGTCACTGAGCATCCCATTTTGTTCTTGGATGATCCCACCACTGGCTTAGACTTGAGAACTACGACTGATGTCATCTCAATCCTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030216-'11-10,'11-8,12-10=AN
Average complexity
A_C1
Mappability confidence:
89%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(28.1=100)
A:
PF0000522=ABC_tran=FE(37.0=100)
C2:
PF0000522=ABC_tran=PD(21.5=63.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTCTTAGCTGCAAGGAGA
R:
TCAGGATTGAGATGACATCAGTC
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]