HsaEX0000574 @ hg38
Exon Skipping
Gene
ENSG00000118777 | ABCG2
Description
ATP binding cassette subfamily G member 2 (Junior blood group) [Source:HGNC Symbol;Acc:HGNC:74]
Coordinates
chr4:88121635-88131917:-
Coord C1 exon
chr4:88131803-88131917
Coord A exon
chr4:88131061-88131213
Coord C2 exon
chr4:88121635-88121792
Length
153 bp
Sequences
Splice sites
3' ss Seq
AAAATGCTATTTGCCTTAAGGAT
3' ss Score
4.72
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTTATTAGATGTCTTAGCTGCAAGGAAAGATCCAAGTGGATTATCTGGAGATGTTCTGATAAATGGAGCACCGCGACCTGCCAATTTCAAATGTAATTCAGGTTACGTGGTACAA
Seq A exon
GATGATGTTGTGATGGGCACTCTGACGGTGAGAGAAAACTTACAGTTCTCAGCAGCTCTTCGGCTTGCAACAACTATGACGAATCATGAAAAAAACGAACGGATTAACAGGGTCATTCAAGAGTTAGGTCTGGATAAAGTGGCAGACTCCAAG
Seq C2 exon
GTTGGAACTCAGTTTATCCGTGGTGTGTCTGGAGGAGAAAGAAAAAGGACTAGTATAGGAATGGAGCTTATCACTGATCCTTCCATCTTGTTCTTGGATGAGCCTACAACTGGCTTAGACTCAAGCACAGCAAATGCTGTCCTTTTGCTCCTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118777-'12-15,'12-14,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
PF0000522=ABC_tran=FE(33.1=100)
C2:
PF0000522=ABC_tran=PD(23.8=67.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTAGCTGCAAGGAAAGATCC
R:
GGAGCAAAAGGACAGCATTTGC
Band lengths:
257-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development