MmuEX6004590 @ mm10
Exon Skipping
Gene
ENSMUSG00000029802 | Abcg2
Description
ATP-binding cassette, sub-family G (WHITE), member 2 [Source:MGI Symbol;Acc:MGI:1347061]
Coordinates
chr6:58664444-58667039:+
Coord C1 exon
chr6:58664444-58664558
Coord A exon
chr6:58665104-58665256
Coord C2 exon
chr6:58666882-58667039
Length
153 bp
Sequences
Splice sites
3' ss Seq
AAATGCCACCTTGCCTTAAGGAT
3' ss Score
3.96
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTTGCTAGATGTCTTAGCAGCAAGGAAAGATCCAAAGGGATTATCTGGAGATGTTTTGATAAATGGAGCACCTCAACCTGCCCATTTCAAATGCTGTTCAGGTTATGTGGTTCAA
Seq A exon
GATGACGTTGTGATGGGCACCCTGACAGTGAGAGAAAACTTACAGTTCTCAGCAGCTCTTCGACTTCCAACAACTATGAAGAATCATGAAAAAAATGAACGGATTAACACAATCATTAAAGAGTTAGGTCTGGAAAAAGTAGCAGATTCTAAG
Seq C2 exon
GTCGGAACTCAGTTTATCCGTGGCATCTCTGGAGGAGAAAGAAAAAGGACAAGCATAGGGATGGAGCTGATCACTGACCCTTCCATCCTCTTCCTGGATGAGCCCACGACTGGTTTGGACTCAAGCACAGCGAATGCTGTCCTTTTGCTCCTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029802_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(55.9=100),PF0106119=ABC2_membrane=PU(12.5=12.8)
A:
PF0000522=ABC_tran=FE(33.1=100)
C2:
PF0000522=ABC_tran=PD(23.8=67.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAGATGTCTTAGCAGCAAGG
R:
CATTCGCTGTGCTTGAGTCCA
Band lengths:
249-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types